Uses of Class
org.incenp.linkml.core.LinkMLRuntimeException

Packages that use LinkMLRuntimeException

Package	Description
org.incenp.linkml.core
org.incenp.linkml.core.converters
org.incenp.linkml.ext
org.incenp.linkml.schema

Uses of LinkMLRuntimeException in org.incenp.linkml.core

Subclasses of LinkMLRuntimeException in org.incenp.linkml.core

Modifier and Type	Class	Description
class	LinkMLInternalError	An exception caused by an internal error within the LinkML runtime.
class	LinkMLValueError	An exception caused by some invalid data among the data manipulated by the LinkML runtime.

Methods in org.incenp.linkml.core that throw LinkMLRuntimeException

Modifier and Type	Method	Description
Object	IConverter.convert(Object raw, ConverterContext ctx)	Converts a raw object into a LinkML object.
void	IConverter.convertForSlot(Object raw, Object dest, Slot slot, ConverterContext ctx)	Converts a raw object into a LinkML object and assigns the result to a slot of another object.
protected Object	CurieConverter.convertImpl(Object raw, ConverterContext ctx)
Map<String,String>	PrefixDeclarationExtractor.extractPrefixes(Map<String,Object> rawMap, Object dest, ConverterContext ctx)	Extracts prefix declarations from the raw representation of a LinkML object.
void	ConverterContext.finalizeAssignments()	Performs all delayed assignments.
void	ConverterContext.finalizeAssignments(boolean failOnMissing)	Performs all delayed assignments, optionally failing if an assignment refers to a missing object.
IConverter	ConverterContext.getConverter(Class<?> type)	Gets the converter for objects of the given type.
IConverter	ConverterContext.getConverter(Slot slot)	Gets the converter for the type of object expected by the given slot.
IConverter	IConverterProvider.getConverter(Class<?> type)	Gets a converter for objects of the given type.
Object	AliasTypeDesignatorResolver.getDesignator(ClassInfo klass)
Object	DefaultTypeDesignatorResolver.getDesignator(ClassInfo klass)
Object	ITypeDesignatorResolver.getDesignator(ClassInfo klass)	Gets a single value that designates the provided class.
List<Object>	ITypeDesignatorResolver.getDesignators(ClassInfo klass)	Gets values that designate the provided class along with its ancestors.
List<Object>	TypeDesignatorResolverBase.getDesignators(ClassInfo klass)
<T> T	ConverterContext.getObject(Class<T> type, String name, boolean create)	Dereferences a global object, optionally creating it if does not already exist.
Object	ConverterContext.getObject(Slot slot, String name, Object target)	Dereferences a global object and assigns it to a slot on another object.
<T> T	ObjectCache.getObject(Class<T> type, String name)	Looks up for an object with the specified name.
<T> T	ObjectCache.getObject(Class<T> type, String name, boolean create)	Looks up for an object with the specified name.
void	ConverterContext.getObjects(Class<?> type, List<String> names, List<Object> target)	Dereferences several global objects and assigns them to a list.
static Slot	Slot.getSlot(Class<?> klass, String name)	Gets the Slot object corresponding to a given field in a given class.
Object	Slot.getValue(Object source)	Gets the value of the slot for the given object.
Object	ClassInfo.newInstance()	Creates a new instance of the class.
void	ISlotProcessor.process(Slot slot, Object object, Object value)	Performs the operation for the given slot of the given object.
void	ClassInfo.processSlots(Object object, ISlotProcessor processor, boolean unset)	Applies an operation to all the slots for a given object.
ClassInfo	AliasTypeDesignatorResolver.resolve(String designator, ClassInfo base)
ClassInfo	DefaultTypeDesignatorResolver.resolve(String designator, ClassInfo base)
ClassInfo	ITypeDesignatorResolver.resolve(String designator, ClassInfo base)	Resolves a single type designator into a LinkML class.
ClassInfo	ITypeDesignatorResolver.resolve(List<String> designators, ClassInfo base)	Resolves a multi-valued designator into a LinkML class.
ClassInfo	TypeDesignatorResolverBase.resolve(List<String> designators, ClassInfo base)
Object	CurieConverter.serialise(Object object, ConverterContext ctx)
Object	IConverter.serialise(Object object, ConverterContext ctx)	Converts a LinkML object into a raw object.
Object	IConverter.serialiseForSlot(Object object, Slot slot, ConverterContext ctx)	Converts a LinkML object into a raw object, when the object is the value of a specific LinkML slot.
void	Slot.setValue(Object target, Object value)	Assigns a value to the slot for the given object.

Constructors in org.incenp.linkml.core that throw LinkMLRuntimeException

Modifier	Constructor	Description
	Slot(Field field)	Creates a new instance.
	Slot(Field field, Class<?> klass)	Creates a new instance.

Uses of LinkMLRuntimeException in org.incenp.linkml.core.converters

Methods in org.incenp.linkml.core.converters that throw LinkMLRuntimeException

Modifier and Type	Method	Description
Object	ObjectConverter.convert(Object raw, ConverterContext ctx)
Object	ObjectConverter.convert(Map<String,Object> raw, String id, ConverterContext ctx)	Converts a raw map into a new instance of a LinkML object.
Object	ObjectConverter.convert(Map<String,Object> raw, ConverterContext ctx)	Converts a raw map into a new instance of a LinkML object.
Object	ScalarConverterBase.convert(Object raw, ConverterContext ctx)
Object	TransparentConverter.convert(Object raw, ConverterContext ctx)
void	ObjectConverter.convertForSlot(Object raw, Object dest, Slot slot, ConverterContext ctx)	Converts the value of a single slot and assigns it to the target object.
void	ScalarConverterBase.convertForSlot(Object raw, Object dest, Slot slot, ConverterContext ctx)
void	TransparentConverter.convertForSlot(Object raw, Object dest, Slot slot, ConverterContext ctx)
protected Object	Base16BlobConverter.convertImpl(Object raw, ConverterContext ctx)
protected Object	Base64BlobConverter.convertImpl(Object raw, ConverterContext ctx)
protected Object	BooleanConverter.convertImpl(Object raw, ConverterContext ctx)
protected Object	DateConverter.convertImpl(Object raw, ConverterContext ctx)
protected Object	DatetimeConverter.convertImpl(Object raw, ConverterContext ctx)
protected Object	DoubleConverter.convertImpl(Object raw, ConverterContext ctx)
protected Object	EnumConverter.convertImpl(Object raw, ConverterContext ctx)
protected Object	FloatConverter.convertImpl(Object raw, ConverterContext ctx)
protected Object	IntegerConverter.convertImpl(Object raw, ConverterContext ctx)
protected abstract Object	ScalarConverterBase.convertImpl(Object raw, ConverterContext ctx)	Performs the actual type conversion.
protected Object	StringConverter.convertImpl(Object raw, ConverterContext ctx)
protected Object	TimeConverter.convertImpl(Object raw, ConverterContext ctx)
protected Object	URIConverter.convertImpl(Object raw, ConverterContext ctx)
void	ObjectConverter.convertTo(Object raw, Object dest, ConverterContext ctx)	Converts a raw object into an instance of a LinkML object, where the object already exists.
void	ObjectConverter.convertTo(Map<String,Object> rawMap, Object dest, ConverterContext ctx)	Converts a raw map into an instance of a LinkML object, where the object already exists.
protected String	ObjectConverter.getGlobalIdentifier(Object raw, ConverterContext ctx)	Converts the given raw object into an identifier for the target object type.
protected List<String>	ObjectConverter.getGlobalIdentifierList(Object raw, ConverterContext ctx)	Converts the given list of raw objects into identifiers for the target object type.
protected List<Object>	ObjectConverter.normaliseList(Object raw, InliningMode expected)	Normalises a raw multi-valued slot.
Object	Base16BlobConverter.serialise(Object object, ConverterContext ctx)
Object	Base64BlobConverter.serialise(Object object, ConverterContext ctx)
Object	DateConverter.serialise(Object object, ConverterContext ctx)
Object	DatetimeConverter.serialise(Object object, ConverterContext ctx)
Object	EnumConverter.serialise(Object object, ConverterContext ctx)
Map<String,Object>	ObjectConverter.serialise(Object object, boolean withIdentifier, ConverterContext ctx)	Converts a LinkML object into a raw object.
Object	ObjectConverter.serialise(Object object, ConverterContext ctx)
Object	ScalarConverterBase.serialise(Object object, ConverterContext ctx)
Object	TimeConverter.serialise(Object object, ConverterContext ctx)
Object	TransparentConverter.serialise(Object object, ConverterContext ctx)
Object	URIConverter.serialise(Object object, ConverterContext ctx)
Object	ObjectConverter.serialiseForSlot(Object object, Slot slot, ConverterContext ctx)
Object	ScalarConverterBase.serialiseForSlot(Object object, Slot slot, ConverterContext ctx)
Object	TransparentConverter.serialiseForSlot(Object object, Slot slot, ConverterContext ctx)
protected Map<String,Object>	ObjectConverter.serialiseInit(Object object, boolean withIdentifier, ConverterContext ctx)	Initialises the raw map that will be used to store the serialisation of the given object.
protected void	ObjectConverter.serialiseSlot(Slot slot, Object value, Map<String,Object> dest, ConverterContext ctx)	Serialises the value of a single slot.
protected Object	ObjectConverter.toIdentifier(Object object, ConverterContext ctx)	Gets the unique identifier for the given object.
protected List<Object>	ObjectConverter.toList(Object value, boolean wrap)	Turns a raw object into a list.
protected Map<String,Object>	ObjectConverter.toMap(Object value)	Checks that a raw object is a String-keyed map, and casts it as such.

Constructors in org.incenp.linkml.core.converters that throw LinkMLRuntimeException

Modifier	Constructor	Description
	EnumConverter(Class<?> targetEnum)	Creates a new converter for the specified type of enum.

Uses of LinkMLRuntimeException in org.incenp.linkml.ext

Methods in org.incenp.linkml.ext that throw LinkMLRuntimeException

Modifier and Type	Method	Description
<T> void	ObjectLoader.dumpObject(File file, T object)	Dumps a LinkML object into a YAML file.
<T> void	ObjectLoader.dumpObject(File file, T object, DataFormat format)	Dumps a LinkML object into a file.
<T> void	ObjectLoader.dumpObject(OutputStream stream, T object)	Dumps a LinkML object into a YAML stream.
<T> void	ObjectLoader.dumpObject(OutputStream stream, T object, DataFormat format)	Dumps a LinkML object into a stream.
<T> void	ObjectLoader.dumpObjects(File file, List<T> objects)	Dumps a list of LinkML objects into a YAML file.
<T> void	ObjectLoader.dumpObjects(File file, List<T> objects, DataFormat format)	Dumps a list of LinkML objects into a file.
<T> void	ObjectLoader.dumpObjects(OutputStream stream, List<T> objects)	Dumps a list of LinkML objects into a YAML file.
<T> void	ObjectLoader.dumpObjects(OutputStream stream, List<T> objects, DataFormat format)	Dumps a list of LinkML objects into a file.
<T> T	ObjectLoader.loadObject(File file, Class<T> type)	Loads an instance of the specified type from a YAML file.
<T> T	ObjectLoader.loadObject(File file, Class<T> type, DataFormat format)	Loads an instance of the specified type from a file.
<T> T	ObjectLoader.loadObject(InputStream stream, Class<T> type)	Loads an instance of the specified type from a YAML stream.
<T> T	ObjectLoader.loadObject(InputStream stream, Class<T> type, DataFormat format)	Loads an instance of the specified type from a stream.
<T> List<T>	ObjectLoader.loadObjects(File file, Class<T> type)	Loads a list of instances of the specified type from a YAML file.
<T> List<T>	ObjectLoader.loadObjects(File file, Class<T> type, DataFormat format)	Loads a list of instances of the specified type from a file.
<T> List<T>	ObjectLoader.loadObjects(InputStream stream, Class<T> type)	Loads a list of instances of the specified type from a YAML stream.
<T> List<T>	ObjectLoader.loadObjects(InputStream stream, Class<T> type, DataFormat format)	Loads a list of instances of the specified type from a stream.

Uses of LinkMLRuntimeException in org.incenp.linkml.schema

Methods in org.incenp.linkml.schema that throw LinkMLRuntimeException

Modifier and Type	Method	Description
Object	SchemaDefinitionConverter.convert(Map<String,Object> raw, String id, ConverterContext ctx)
void	ClassDefinitionConverter.convertTo(Map<String,Object> rawMap, Object dest, ConverterContext ctx)
void	ElementConverter.convertTo(Map<String,Object> rawMap, Object dest, ConverterContext ctx)
protected boolean	ElementConverter.isOverridden(org.incenp.linkml.schema.model.Element element)	Checks whether the schema schema is overridden by another one about the given element.