Index

A C D E F G H I K L M N O P Q R S T U V W _
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

A

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.AddSubsetContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeDefinitionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangesetContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeSynonymContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteEdgeContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsCURIEContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsIRIContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsLabelContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdlistContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.MoveContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewDefinitionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewEdgeContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewNodeContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewSynonymContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NodeTypeContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteNoReplacementContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithAlternativeContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithReplacementContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.QualifierContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveDefinitionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSubsetContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSynonymContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RenameContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.StringContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TextContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TypetagContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.UnobsoleteContext

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.AddNodeToSubset

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.Change

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.ClassCreation

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.ComplexChange

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.EdgeChange

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.EdgeCreation

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.EdgeDeletion

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.EdgeLogicalInterpretationChange

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.EdgeObsoletion

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.EdgeRewiring

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.LogicalAxiomChange

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.MappingCreation

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.MappingPredicateChange

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.MappingReplacement

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.MetadataAssertionPredicateChange

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.MetadataAssertionReplacement

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.MultiNodeObsoletion

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NameBecomesSynonym

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NewMapping

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NewMetadataAssertion

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NewSynonym

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NewTextDefinition

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NodeAnnotationChange

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NodeAnnotationReplacement

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NodeChange

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NodeCreation

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NodeDeepening

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NodeDeletion

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NodeDirectMerge

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NodeMappingChange

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NodeMetadataAssertionChange

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NodeMove

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NodeObsoletion

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NodeObsoletionWithDirectReplacement

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NodeObsoletionWithNoDirectReplacement

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NodeRename

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NodeShallowing

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NodeSynonymChange

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NodeTextDefinitionChange

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.NodeUnobsoletion

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.ObjectPropertyCreation

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.PlaceUnder

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.PredicateChange

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.RemoveMapping

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.RemoveMetadataAssertion

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.RemoveNodeFromSubset

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.RemoveSynonym

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.RemoveTextDefinition

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.RemoveUnder

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.SetLanguageForName

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.SynonymPredicateChange

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.SynonymReplacement

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.TextDefinitionReplacement

accept(IChangeVisitor<T>) - Method in class org.incenp.obofoundry.kgcl.model.Transaction

Activity - Class in org.incenp.obofoundry.kgcl.model

a provence-generating activity

Activity() - Constructor for class org.incenp.obofoundry.kgcl.model.Activity

add(String, String) - Method in interface org.incenp.obofoundry.kgcl.ILabelResolver

Registers a new label-to-identifier mapping.

add(String, String) - Method in class org.incenp.obofoundry.kgcl.SimpleLabelResolver

addErrorListener(IParseTreeErrorListener) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

Adds a listener for errors that may occur when processing the parse tree.

AddNodeToSubset - Class in org.incenp.obofoundry.kgcl.model

Places a node inside a subset, by annotating that node

AddNodeToSubset() - Constructor for class org.incenp.obofoundry.kgcl.model.AddNodeToSubset

addRejectListener(RejectedChangeListener) - Method in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

Adds a listener for change rejection events.

addSubset() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

addSubset() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

AddSubsetContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.AddSubsetContext

AddToSubset - Class in org.incenp.obofoundry.kgcl.model

placing an element inside a subset

AddToSubset() - Constructor for class org.incenp.obofoundry.kgcl.model.AddToSubset

Agent - Class in org.incenp.obofoundry.kgcl.model

a provence-generating agent

Agent() - Constructor for class org.incenp.obofoundry.kgcl.model.Agent

AllowsAutomaticReplacementOfEdges - Class in org.incenp.obofoundry.kgcl.model

Applies to an obsoletion in which annotations or edges pointing at the obsoleted node can be automatically rewired to point to a target

AllowsAutomaticReplacementOfEdges() - Constructor for class org.incenp.obofoundry.kgcl.model.AllowsAutomaticReplacementOfEdges

alt_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithAlternativeContext

Annotation - Class in org.incenp.obofoundry.kgcl.model

owl annotations.

Annotation() - Constructor for class org.incenp.obofoundry.kgcl.model.Annotation

ANNOTATION - Enum constant in enum class org.incenp.obofoundry.kgcl.model.EdgeType

An edge that is an annotation between a class and an IRI.

ANNOTATION_PROPERTY - Enum constant in enum class org.incenp.obofoundry.kgcl.model.OwlType

apply(List<Change>) - Method in interface org.incenp.obofoundry.kgcl.IPatcher

Applies a changeset to the knowledge graph.

apply(List<Change>, boolean) - Method in interface org.incenp.obofoundry.kgcl.IPatcher

Applies a changeset to the knowledge graph.

apply(List<Change>, boolean) - Method in class org.incenp.obofoundry.kgcl.owl.OntologyPatcher

apply(List<Change>, IPatcher, boolean, List<RejectedChange>) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Applies a KGCL changeset using the provided patcher object.

apply(List<Change>, OWLOntology, OWLReasoner, boolean) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Applies a KGCL changeset to an ontology.

apply(List<Change>, OWLOntology, OWLReasoner, boolean, List<RejectedChange>) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Applies a KGCL changeset to an ontology.

apply(List<Change>, OWLOntology, OWLReasoner, boolean, List<RejectedChange>, boolean) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Applies a KGCL changeset to an ontology.

apply(Change) - Method in interface org.incenp.obofoundry.kgcl.IPatcher

Applies a single change to the knowledge graph.

apply(Change) - Method in class org.incenp.obofoundry.kgcl.owl.OntologyPatcher

ApplyCommand - Class in org.incenp.obofoundry.kgcl.robot

A ROBOT command to apply KGCL-described changes to an ontology.

ApplyCommand() - Constructor for class org.incenp.obofoundry.kgcl.robot.ApplyCommand

AUTOID_BASE_IRI - Static variable in class org.incenp.obofoundry.kgcl.AutoIDAllocator

AutoIDAllocator - Class in org.incenp.obofoundry.kgcl

Helper object to assign automatically generated IDs to KGCL change objects.

AutoIDAllocator(IAutoIDGenerator) - Constructor for class org.incenp.obofoundry.kgcl.AutoIDAllocator

Creates a new instance.

C

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.Activity

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.AddNodeToSubset

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.AddToSubset

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.Agent

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.AllowsAutomaticReplacementOfEdges

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.Annotation

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.Change

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.ChangeLanguageElement

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.ChangeMixin

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.ChangeSetSummaryStatistic

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.ClassCreation

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.ClassNode

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.ComplexChange

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.Configuration

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.Creation

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.DatatypeChange

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.DatatypeOrLanguageTagChange

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.Deletion

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.Edge

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.EdgeChange

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.EdgeCreation

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.EdgeDeletion

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.EdgeLogicalInterpretationChange

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.EdgeObsoletion

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.EdgeRewiring

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.InstanceNode

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.LanguageTagChange

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.LogicalAxiomChange

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.LogicalDefinition

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.MappingCreation

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.MappingPredicateChange

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.MappingReplacement

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.MetadataAssertionPredicateChange

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.MetadataAssertionReplacement

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.MultiNodeObsoletion

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NameBecomesSynonym

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NewMapping

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NewMetadataAssertion

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NewSynonym

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NewTextDefinition

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.Node

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeAnnotationChange

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeAnnotationReplacement

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeChange

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeCreation

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeDeepening

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeDeletion

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeDirectMerge

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeMappingChange

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeMetadataAssertionChange

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeMove

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeObsoletion

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeObsoletionWithDirectReplacement

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeObsoletionWithNoDirectReplacement

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeRename

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeShallowing

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeSynonymChange

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeTextDefinitionChange

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeUnobsoletion

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.ObjectPropertyCreation

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.Obsoletion

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.OntologyElement

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.OntologySubset

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.PlaceUnder

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.PredicateChange

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.PropertyValue

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.ProvElement

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.RemoveFromSubset

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.RemoveMapping

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.RemoveMetadataAssertion

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.RemoveNodeFromSubset

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.RemoveSynonym

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.RemoveTextDefinition

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.RemoveUnder

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.Session

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.SetLanguageForName

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.SubsetMembershipChange

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.SynonymPredicateChange

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.SynonymReplacement

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.TextDefinitionReplacement

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.TextualDiff

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.Transaction

canEqual(Object) - Method in class org.incenp.obofoundry.kgcl.model.Unobsoletion

change() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

change() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangesetContext

change(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangesetContext

Change - Class in org.incenp.obofoundry.kgcl.model

Any change perform on an ontology or knowledge graph

Change() - Constructor for class org.incenp.obofoundry.kgcl.model.Change

changeAnnotation() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

changeAnnotation() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

ChangeAnnotationContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

ChangeContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

changeDefinition() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

changeDefinition() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

ChangeDefinitionContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeDefinitionContext

ChangeLanguageElement - Class in org.incenp.obofoundry.kgcl.model

A broad grouping for all elements of the change language

ChangeLanguageElement() - Constructor for class org.incenp.obofoundry.kgcl.model.ChangeLanguageElement

ChangeMixin - Class in org.incenp.obofoundry.kgcl.model

root class for all change mixins

ChangeMixin() - Constructor for class org.incenp.obofoundry.kgcl.model.ChangeMixin

changePredicate() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

changePredicate() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

ChangePredicateContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

changeset() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

ChangesetContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangesetContext

ChangeSetSummaryStatistic - Class in org.incenp.obofoundry.kgcl.model

A summary statistic for a set of changes of the same type, grouped by zero or more node properties

ChangeSetSummaryStatistic() - Constructor for class org.incenp.obofoundry.kgcl.model.ChangeSetSummaryStatistic

changeSynonym() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

changeSynonym() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

ChangeSynonymContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeSynonymContext

ChangeVisitorBase<T> - Class in org.incenp.obofoundry.kgcl

Dummy implementation of IChangeVisitor.

ChangeVisitorBase() - Constructor for class org.incenp.obofoundry.kgcl.ChangeVisitorBase

channelNames - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

CLASS - Enum constant in enum class org.incenp.obofoundry.kgcl.model.OwlType

ClassCreation - Class in org.incenp.obofoundry.kgcl.model

A node creation where the owl type is 'owl:Class'

ClassCreation() - Constructor for class org.incenp.obofoundry.kgcl.model.ClassCreation

ClassNode - Class in org.incenp.obofoundry.kgcl.model

A node that is a class

ClassNode() - Constructor for class org.incenp.obofoundry.kgcl.model.ClassNode

close() - Method in class org.incenp.obofoundry.kgcl.KGCLWriter

Closes the underlying writer.

COMMENT - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

COMMENT - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

ComplexChange - Class in org.incenp.obofoundry.kgcl.model

A change that is is a composition of other changes

ComplexChange() - Constructor for class org.incenp.obofoundry.kgcl.model.ComplexChange

Configuration - Class in org.incenp.obofoundry.kgcl.model

The meaning of operations can be configured

Configuration() - Constructor for class org.incenp.obofoundry.kgcl.model.Configuration

copyFrom(KGCLParser.IdContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdContext

copyFrom(KGCLParser.ObsoleteContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteContext

Creation - Class in org.incenp.obofoundry.kgcl.model

Creation of an element.

Creation() - Constructor for class org.incenp.obofoundry.kgcl.model.Creation

CURIE - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

CURIE - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

CURIE() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsCURIEContext

CURIE() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TypetagContext

D

datatype - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TypetagContext

DatatypeChange - Class in org.incenp.obofoundry.kgcl.model

None

DatatypeChange() - Constructor for class org.incenp.obofoundry.kgcl.model.DatatypeChange

DatatypeOrLanguageTagChange - Class in org.incenp.obofoundry.kgcl.model

A change in a value assertion where the value remain unchanged but either the datatype or language changes

DatatypeOrLanguageTagChange() - Constructor for class org.incenp.obofoundry.kgcl.model.DatatypeOrLanguageTagChange

delete() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

delete() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

DeleteContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteContext

deleteEdge() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

deleteEdge() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

DeleteEdgeContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteEdgeContext

Deletion - Class in org.incenp.obofoundry.kgcl.model

Removal of an element.

Deletion() - Constructor for class org.incenp.obofoundry.kgcl.model.Deletion

DirectOWLTranslator - Class in org.incenp.obofoundry.kgcl.owl

A visitor to convert a list of KGCL Change objects into a list of OWL API OWLOntologyChange objects that, when applied to an ontology, would implement the requested changes.

DirectOWLTranslator(OWLOntology, OWLReasoner) - Constructor for class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

Creates a new instance for the specified ontology.

doDefault(Change) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

doDefault(Change) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

Override this method in derived classes to change the value returned by unimplemented methods.

doDefault(Change) - Method in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

DQ_STRING - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

DQ_STRING - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

DQ_STRING() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.StringContext

E

Edge - Class in org.incenp.obofoundry.kgcl.model

A relationship between two nodes.

Edge() - Constructor for class org.incenp.obofoundry.kgcl.model.Edge

EdgeChange - Class in org.incenp.obofoundry.kgcl.model

A change in which the element that is the focus of the change is an edge.

EdgeChange() - Constructor for class org.incenp.obofoundry.kgcl.model.EdgeChange

EdgeCreation - Class in org.incenp.obofoundry.kgcl.model

An edge change in which a de-novo edge is created.

EdgeCreation() - Constructor for class org.incenp.obofoundry.kgcl.model.EdgeCreation

EdgeDeletion - Class in org.incenp.obofoundry.kgcl.model

An edge change in which an edge is removed.

EdgeDeletion() - Constructor for class org.incenp.obofoundry.kgcl.model.EdgeDeletion

EdgeLogicalInterpretationChange - Class in org.incenp.obofoundry.kgcl.model

An edge change where the subject, object, and predicate are unchanged, but the logical interpretation changes

EdgeLogicalInterpretationChange() - Constructor for class org.incenp.obofoundry.kgcl.model.EdgeLogicalInterpretationChange

EdgeObsoletion - Class in org.incenp.obofoundry.kgcl.model

An edge change in which an edge is obsoleted.

EdgeObsoletion() - Constructor for class org.incenp.obofoundry.kgcl.model.EdgeObsoletion

EdgeRewiring - Class in org.incenp.obofoundry.kgcl.model

An edge change where one node is replaced with another, as in the case of obsoletion with replacement

EdgeRewiring() - Constructor for class org.incenp.obofoundry.kgcl.model.EdgeRewiring

EdgeType - Enum Class in org.incenp.obofoundry.kgcl.model

Represents the type of an edge between two nodes.

empty - Variable in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

enterAddSubset(KGCLParser.AddSubsetContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.addSubset().

enterAddSubset(KGCLParser.AddSubsetContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.addSubset().

enterChange(KGCLParser.ChangeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.change().

enterChange(KGCLParser.ChangeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.change().

enterChangeAnnotation(KGCLParser.ChangeAnnotationContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.changeAnnotation().

enterChangeAnnotation(KGCLParser.ChangeAnnotationContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.changeAnnotation().

enterChangeDefinition(KGCLParser.ChangeDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.changeDefinition().

enterChangeDefinition(KGCLParser.ChangeDefinitionContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.changeDefinition().

enterChangePredicate(KGCLParser.ChangePredicateContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.changePredicate().

enterChangePredicate(KGCLParser.ChangePredicateContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.changePredicate().

enterChangeset(KGCLParser.ChangesetContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.changeset().

enterChangeset(KGCLParser.ChangesetContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.changeset().

enterChangeSynonym(KGCLParser.ChangeSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.changeSynonym().

enterChangeSynonym(KGCLParser.ChangeSynonymContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.changeSynonym().

enterDelete(KGCLParser.DeleteContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.delete().

enterDelete(KGCLParser.DeleteContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.delete().

enterDeleteEdge(KGCLParser.DeleteEdgeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.deleteEdge().

enterDeleteEdge(KGCLParser.DeleteEdgeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.deleteEdge().

enterEveryRule(ParserRuleContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

enterIdAsCURIE(KGCLParser.IdAsCURIEContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by the IdAsCURIE labeled alternative in KGCLParser.id().

enterIdAsCURIE(KGCLParser.IdAsCURIEContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by the IdAsCURIE labeled alternative in KGCLParser.id().

enterIdAsIRI(KGCLParser.IdAsIRIContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by the IdAsIRI labeled alternative in KGCLParser.id().

enterIdAsIRI(KGCLParser.IdAsIRIContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by the IdAsIRI labeled alternative in KGCLParser.id().

enterIdAsLabel(KGCLParser.IdAsLabelContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by the IdAsLabel labeled alternative in KGCLParser.id().

enterIdAsLabel(KGCLParser.IdAsLabelContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by the IdAsLabel labeled alternative in KGCLParser.id().

enterIdlist(KGCLParser.IdlistContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.idlist().

enterIdlist(KGCLParser.IdlistContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.idlist().

enterMove(KGCLParser.MoveContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.move().

enterMove(KGCLParser.MoveContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.move().

enterNewDefinition(KGCLParser.NewDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.newDefinition().

enterNewDefinition(KGCLParser.NewDefinitionContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.newDefinition().

enterNewEdge(KGCLParser.NewEdgeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.newEdge().

enterNewEdge(KGCLParser.NewEdgeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.newEdge().

enterNewNode(KGCLParser.NewNodeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.newNode().

enterNewNode(KGCLParser.NewNodeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.newNode().

enterNewSynonym(KGCLParser.NewSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.newSynonym().

enterNewSynonym(KGCLParser.NewSynonymContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.newSynonym().

enterNodeType(KGCLParser.NodeTypeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.nodeType().

enterNodeType(KGCLParser.NodeTypeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.nodeType().

enterObsoleteNoReplacement(KGCLParser.ObsoleteNoReplacementContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by the ObsoleteNoReplacement labeled alternative in KGCLParser.obsolete().

enterObsoleteNoReplacement(KGCLParser.ObsoleteNoReplacementContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by the ObsoleteNoReplacement labeled alternative in KGCLParser.obsolete().

enterObsoleteWithAlternative(KGCLParser.ObsoleteWithAlternativeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by the ObsoleteWithAlternative labeled alternative in KGCLParser.obsolete().

enterObsoleteWithAlternative(KGCLParser.ObsoleteWithAlternativeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by the ObsoleteWithAlternative labeled alternative in KGCLParser.obsolete().

enterObsoleteWithReplacement(KGCLParser.ObsoleteWithReplacementContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by the ObsoleteWithReplacement labeled alternative in KGCLParser.obsolete().

enterObsoleteWithReplacement(KGCLParser.ObsoleteWithReplacementContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by the ObsoleteWithReplacement labeled alternative in KGCLParser.obsolete().

enterQualifier(KGCLParser.QualifierContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.qualifier().

enterQualifier(KGCLParser.QualifierContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.qualifier().

enterRemoveDefinition(KGCLParser.RemoveDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.removeDefinition().

enterRemoveDefinition(KGCLParser.RemoveDefinitionContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.removeDefinition().

enterRemoveSubset(KGCLParser.RemoveSubsetContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.removeSubset().

enterRemoveSubset(KGCLParser.RemoveSubsetContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.removeSubset().

enterRemoveSynonym(KGCLParser.RemoveSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.removeSynonym().

enterRemoveSynonym(KGCLParser.RemoveSynonymContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.removeSynonym().

enterRename(KGCLParser.RenameContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.rename().

enterRename(KGCLParser.RenameContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.rename().

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.AddSubsetContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeDefinitionContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangesetContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeSynonymContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteEdgeContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsCURIEContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsIRIContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsLabelContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdlistContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.MoveContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewDefinitionContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewEdgeContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewNodeContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewSynonymContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NodeTypeContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteNoReplacementContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithAlternativeContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithReplacementContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.QualifierContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveDefinitionContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSubsetContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSynonymContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RenameContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.StringContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TextContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TypetagContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.UnobsoleteContext

enterString(KGCLParser.StringContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.string().

enterString(KGCLParser.StringContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.string().

enterText(KGCLParser.TextContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.text().

enterText(KGCLParser.TextContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.text().

enterTypetag(KGCLParser.TypetagContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.typetag().

enterTypetag(KGCLParser.TypetagContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.typetag().

enterUnobsolete(KGCLParser.UnobsoleteContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.unobsolete().

enterUnobsolete(KGCLParser.UnobsoleteContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.unobsolete().

EOF() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangesetContext

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.Activity

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.AddNodeToSubset

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.AddToSubset

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.Agent

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.AllowsAutomaticReplacementOfEdges

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.Annotation

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.Change

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.ChangeLanguageElement

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.ChangeMixin

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.ChangeSetSummaryStatistic

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.ClassCreation

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.ClassNode

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.ComplexChange

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.Configuration

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.Creation

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.DatatypeChange

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.DatatypeOrLanguageTagChange

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.Deletion

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.Edge

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.EdgeChange

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.EdgeCreation

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.EdgeDeletion

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.EdgeLogicalInterpretationChange

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.EdgeObsoletion

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.EdgeRewiring

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.InstanceNode

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.LanguageTagChange

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.LogicalAxiomChange

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.LogicalDefinition

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.MappingCreation

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.MappingPredicateChange

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.MappingReplacement

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.MetadataAssertionPredicateChange

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.MetadataAssertionReplacement

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.MultiNodeObsoletion

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NameBecomesSynonym

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NewMapping

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NewMetadataAssertion

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NewSynonym

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NewTextDefinition

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.Node

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeAnnotationChange

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeAnnotationReplacement

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeChange

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeCreation

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeDeepening

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeDeletion

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeDirectMerge

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeMappingChange

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeMetadataAssertionChange

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeMove

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeObsoletion

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeObsoletionWithDirectReplacement

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeObsoletionWithNoDirectReplacement

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeRename

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeShallowing

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeSynonymChange

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeTextDefinitionChange

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.NodeUnobsoletion

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.ObjectPropertyCreation

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.Obsoletion

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.OntologyElement

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.OntologySubset

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.PlaceUnder

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.PredicateChange

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.PropertyValue

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.ProvElement

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.RemoveFromSubset

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.RemoveMapping

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.RemoveMetadataAssertion

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.RemoveNodeFromSubset

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.RemoveSynonym

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.RemoveTextDefinition

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.RemoveUnder

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.Session

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.SetLanguageForName

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.SubsetMembershipChange

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.SynonymPredicateChange

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.SynonymReplacement

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.TextDefinitionReplacement

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.TextualDiff

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.Transaction

equals(Object) - Method in class org.incenp.obofoundry.kgcl.model.Unobsoletion

execute(CommandState, String[]) - Method in class org.incenp.obofoundry.kgcl.robot.ApplyCommand

execute(CommandState, String[]) - Method in class org.incenp.obofoundry.kgcl.robot.MintCommand

exitAddSubset(KGCLParser.AddSubsetContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.addSubset().

exitAddSubset(KGCLParser.AddSubsetContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.addSubset().

exitChange(KGCLParser.ChangeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.change().

exitChange(KGCLParser.ChangeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.change().

exitChangeAnnotation(KGCLParser.ChangeAnnotationContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.changeAnnotation().

exitChangeAnnotation(KGCLParser.ChangeAnnotationContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.changeAnnotation().

exitChangeDefinition(KGCLParser.ChangeDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.changeDefinition().

exitChangeDefinition(KGCLParser.ChangeDefinitionContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.changeDefinition().

exitChangePredicate(KGCLParser.ChangePredicateContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.changePredicate().

exitChangePredicate(KGCLParser.ChangePredicateContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.changePredicate().

exitChangeset(KGCLParser.ChangesetContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.changeset().

exitChangeset(KGCLParser.ChangesetContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.changeset().

exitChangeSynonym(KGCLParser.ChangeSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.changeSynonym().

exitChangeSynonym(KGCLParser.ChangeSynonymContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.changeSynonym().

exitDelete(KGCLParser.DeleteContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.delete().

exitDelete(KGCLParser.DeleteContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.delete().

exitDeleteEdge(KGCLParser.DeleteEdgeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.deleteEdge().

exitDeleteEdge(KGCLParser.DeleteEdgeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.deleteEdge().

exitEveryRule(ParserRuleContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

exitIdAsCURIE(KGCLParser.IdAsCURIEContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by the IdAsCURIE labeled alternative in KGCLParser.id().

exitIdAsCURIE(KGCLParser.IdAsCURIEContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by the IdAsCURIE labeled alternative in KGCLParser.id().

exitIdAsIRI(KGCLParser.IdAsIRIContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by the IdAsIRI labeled alternative in KGCLParser.id().

exitIdAsIRI(KGCLParser.IdAsIRIContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by the IdAsIRI labeled alternative in KGCLParser.id().

exitIdAsLabel(KGCLParser.IdAsLabelContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by the IdAsLabel labeled alternative in KGCLParser.id().

exitIdAsLabel(KGCLParser.IdAsLabelContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by the IdAsLabel labeled alternative in KGCLParser.id().

exitIdlist(KGCLParser.IdlistContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.idlist().

exitIdlist(KGCLParser.IdlistContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.idlist().

exitMove(KGCLParser.MoveContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.move().

exitMove(KGCLParser.MoveContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.move().

exitNewDefinition(KGCLParser.NewDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.newDefinition().

exitNewDefinition(KGCLParser.NewDefinitionContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.newDefinition().

exitNewEdge(KGCLParser.NewEdgeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.newEdge().

exitNewEdge(KGCLParser.NewEdgeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.newEdge().

exitNewNode(KGCLParser.NewNodeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.newNode().

exitNewNode(KGCLParser.NewNodeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.newNode().

exitNewSynonym(KGCLParser.NewSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.newSynonym().

exitNewSynonym(KGCLParser.NewSynonymContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.newSynonym().

exitNodeType(KGCLParser.NodeTypeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.nodeType().

exitNodeType(KGCLParser.NodeTypeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.nodeType().

exitObsoleteNoReplacement(KGCLParser.ObsoleteNoReplacementContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by the ObsoleteNoReplacement labeled alternative in KGCLParser.obsolete().

exitObsoleteNoReplacement(KGCLParser.ObsoleteNoReplacementContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by the ObsoleteNoReplacement labeled alternative in KGCLParser.obsolete().

exitObsoleteWithAlternative(KGCLParser.ObsoleteWithAlternativeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by the ObsoleteWithAlternative labeled alternative in KGCLParser.obsolete().

exitObsoleteWithAlternative(KGCLParser.ObsoleteWithAlternativeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by the ObsoleteWithAlternative labeled alternative in KGCLParser.obsolete().

exitObsoleteWithReplacement(KGCLParser.ObsoleteWithReplacementContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by the ObsoleteWithReplacement labeled alternative in KGCLParser.obsolete().

exitObsoleteWithReplacement(KGCLParser.ObsoleteWithReplacementContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by the ObsoleteWithReplacement labeled alternative in KGCLParser.obsolete().

exitQualifier(KGCLParser.QualifierContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.qualifier().

exitQualifier(KGCLParser.QualifierContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.qualifier().

exitRemoveDefinition(KGCLParser.RemoveDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.removeDefinition().

exitRemoveDefinition(KGCLParser.RemoveDefinitionContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.removeDefinition().

exitRemoveSubset(KGCLParser.RemoveSubsetContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.removeSubset().

exitRemoveSubset(KGCLParser.RemoveSubsetContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.removeSubset().

exitRemoveSynonym(KGCLParser.RemoveSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.removeSynonym().

exitRemoveSynonym(KGCLParser.RemoveSynonymContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.removeSynonym().

exitRename(KGCLParser.RenameContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.rename().

exitRename(KGCLParser.RenameContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.rename().

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.AddSubsetContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeDefinitionContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangesetContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeSynonymContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteEdgeContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsCURIEContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsIRIContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsLabelContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdlistContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.MoveContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewDefinitionContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewEdgeContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewNodeContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewSynonymContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NodeTypeContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteNoReplacementContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithAlternativeContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithReplacementContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.QualifierContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveDefinitionContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSubsetContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSynonymContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RenameContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.StringContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TextContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TypetagContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.UnobsoleteContext

exitString(KGCLParser.StringContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.string().

exitString(KGCLParser.StringContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.string().

exitText(KGCLParser.TextContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.text().

exitText(KGCLParser.TextContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.text().

exitTypetag(KGCLParser.TypetagContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.typetag().

exitTypetag(KGCLParser.TypetagContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.typetag().

exitUnobsolete(KGCLParser.UnobsoleteContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.unobsolete().

exitUnobsolete(KGCLParser.UnobsoleteContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.unobsolete().

extractPendingChanges(OWLOntology, ZonedDateTime) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Gets the "pending" (provisional) changes that are stored as KGCL annotations in the ontology,

extractProvisionalChanges(boolean, ZonedDateTime) - Method in class org.incenp.obofoundry.kgcl.owl.ProvisionalOWLTranslator

Extracts the list of provisional changes stored as KGCL annotations within the ontology.

F

factory - Variable in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

factory - Variable in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

findEdges(IRI, IRI, IRI) - Method in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

Gets all axioms representing edges between a subject and an object.

findIDRangeFile() - Static method in class org.incenp.obofoundry.kgcl.robot.IDRangeHelper

Finds an ID range policy file in the current directory.

findMatchingAnnotations(IRI, IRI, NodeChange) - Method in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

Finds all annotations with a literal value that matches the old value of a NodeChange object.

findMatchingAnnotations(IRI, IRI, NodeChange, boolean) - Method in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

Finds all annotations with a literal value that matches the old value of a NodeChange object.

format - Variable in class org.incenp.obofoundry.kgcl.SequentialIDGenerator

fromString(String) - Static method in enum class org.incenp.obofoundry.kgcl.model.OwlType

Parses a string into a OwlType enum value.

G

getAboutEdge() - Method in class org.incenp.obofoundry.kgcl.model.EdgeChange

getAboutNode() - Method in class org.incenp.obofoundry.kgcl.model.NodeChange

getAboutNodeRepresentation() - Method in class org.incenp.obofoundry.kgcl.model.NodeChange

getActedOnBehalfOf() - Method in class org.incenp.obofoundry.kgcl.model.Agent

getActivitySet() - Method in class org.incenp.obofoundry.kgcl.model.Session

getAnnotationProperty() - Method in class org.incenp.obofoundry.kgcl.model.NodeAnnotationChange

getAnnotationPropertyType() - Method in class org.incenp.obofoundry.kgcl.model.NodeAnnotationChange

getAnnotationSet() - Method in class org.incenp.obofoundry.kgcl.model.Annotation

getAnnotationSet() - Method in class org.incenp.obofoundry.kgcl.model.Edge

getAnnotationSet() - Method in class org.incenp.obofoundry.kgcl.model.EdgeCreation

getAnnotationSet() - Method in class org.incenp.obofoundry.kgcl.model.EdgeDeletion

getAnnotationSet() - Method in class org.incenp.obofoundry.kgcl.model.EdgeObsoletion

getAnnotationSet() - Method in class org.incenp.obofoundry.kgcl.model.Node

getAnnotationSet() - Method in class org.incenp.obofoundry.kgcl.model.NodeCreation

getATN() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

getATN() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

getChange() - Method in class org.incenp.obofoundry.kgcl.RejectedChange

Gets the rejected change.

getChangeDate() - Method in class org.incenp.obofoundry.kgcl.model.Change

getChangeSet() - Method in class org.incenp.obofoundry.kgcl.KGCLReader

Gets the KGCL changeset that has been parsed from the underlying source.

getChangeSet() - Method in class org.incenp.obofoundry.kgcl.model.ComplexChange

getChangeSet() - Method in class org.incenp.obofoundry.kgcl.model.Session

getChangeSet() - Method in class org.incenp.obofoundry.kgcl.model.Transaction

getChannelNames() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

getContributor() - Method in class org.incenp.obofoundry.kgcl.model.Change

getContributorPredicate() - Method in class org.incenp.obofoundry.kgcl.model.Configuration

getCreator() - Method in class org.incenp.obofoundry.kgcl.model.Change

getCreatorPredicate() - Method in class org.incenp.obofoundry.kgcl.model.Configuration

getDatatype() - Method in class org.incenp.obofoundry.kgcl.model.EdgeChange

getDefinitionPredicate() - Method in class org.incenp.obofoundry.kgcl.model.Configuration

getDescription() - Method in class org.incenp.obofoundry.kgcl.model.Activity

getDescription() - Method in class org.incenp.obofoundry.kgcl.robot.ApplyCommand

getDescription() - Method in class org.incenp.obofoundry.kgcl.robot.MintCommand

getEndedAtTime() - Method in class org.incenp.obofoundry.kgcl.model.Activity

getErrors() - Method in class org.incenp.obofoundry.kgcl.KGCLReader

Gets all syntax errors that were found when parsing, if any.

getFiller() - Method in class org.incenp.obofoundry.kgcl.model.PropertyValue

getFillerType() - Method in class org.incenp.obofoundry.kgcl.model.Annotation

getGrammarFileName() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

getGrammarFileName() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

getHasDirectReplacement() - Method in class org.incenp.obofoundry.kgcl.model.NodeObsoletion

getHasNondirectReplacement() - Method in class org.incenp.obofoundry.kgcl.model.NodeObsoletion

getHasTextualDiff() - Method in class org.incenp.obofoundry.kgcl.model.NodeRename

getHasTextualDiff() - Method in class org.incenp.obofoundry.kgcl.model.SynonymPredicateChange

getHasTextualDiff() - Method in class org.incenp.obofoundry.kgcl.model.SynonymReplacement

getHasTextualDiff() - Method in class org.incenp.obofoundry.kgcl.model.TextDefinitionReplacement

getHasUndo() - Method in class org.incenp.obofoundry.kgcl.model.Change

getId() - Method in class org.incenp.obofoundry.kgcl.model.Activity

getId() - Method in class org.incenp.obofoundry.kgcl.model.Agent

getId() - Method in class org.incenp.obofoundry.kgcl.model.Change

getId() - Method in class org.incenp.obofoundry.kgcl.model.Node

getIDGenerator(OWLOntology, String, String, String[], boolean) - Static method in class org.incenp.obofoundry.kgcl.robot.IDRangeHelper

Gets an ID generator initialised with data from the specified range file.

getInSubset() - Method in class org.incenp.obofoundry.kgcl.model.AddNodeToSubset

getInSubset() - Method in class org.incenp.obofoundry.kgcl.model.RemoveNodeFromSubset

getInSubset() - Method in class org.incenp.obofoundry.kgcl.model.SubsetMembershipChange

getLanguage() - Method in class org.incenp.obofoundry.kgcl.model.EdgeChange

getLanguage() - Method in class org.incenp.obofoundry.kgcl.model.NodeChange

getLine() - Method in class org.incenp.obofoundry.kgcl.KGCLSyntaxError

Gets the line where the error occurred.

getLiteral(NodeChange) - Method in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

Constructs a literal value from the new value parameters of a change object.

getLiteral(NodeChange, String) - Method in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

Constructs a literal value from the new value parameters of a change object.

getLowerBound() - Method in class org.incenp.obofoundry.idrange.IDRange

Gets the lower bound (inclusive) of the range.

getMainSynonymPredicate() - Method in class org.incenp.obofoundry.kgcl.model.Configuration

getMessage() - Method in class org.incenp.obofoundry.kgcl.KGCLSyntaxError

Gets the error message.

getModeNames() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

getName() - Method in class org.incenp.obofoundry.kgcl.model.Node

getName() - Method in class org.incenp.obofoundry.kgcl.model.NodeCreation

getName() - Method in class org.incenp.obofoundry.kgcl.robot.ApplyCommand

getName() - Method in class org.incenp.obofoundry.kgcl.robot.MintCommand

getNamePredicate() - Method in class org.incenp.obofoundry.kgcl.model.Configuration

getNewDatatype() - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

getNewId(String) - Method in interface org.incenp.obofoundry.kgcl.ILabelResolver

Mints a new identifier for the given label.

getNewId(String) - Method in class org.incenp.obofoundry.kgcl.SimpleLabelResolver

getNewLanguage() - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

getNewObjectType() - Method in class org.incenp.obofoundry.kgcl.model.NodeMove

getNewValue() - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

getNewValueType() - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

getNodeId() - Method in class org.incenp.obofoundry.kgcl.model.NodeCreation

getObject() - Method in class org.incenp.obofoundry.kgcl.model.Edge

getObject() - Method in class org.incenp.obofoundry.kgcl.model.EdgeCreation

getObject() - Method in class org.incenp.obofoundry.kgcl.model.EdgeDeletion

getObject() - Method in class org.incenp.obofoundry.kgcl.model.EdgeObsoletion

getObject() - Method in class org.incenp.obofoundry.kgcl.model.NewMapping

getObject() - Method in class org.incenp.obofoundry.kgcl.model.NewMetadataAssertion

getObject() - Method in class org.incenp.obofoundry.kgcl.model.RemoveMapping

getObject() - Method in class org.incenp.obofoundry.kgcl.model.RemoveMetadataAssertion

getObjectRepresentation() - Method in class org.incenp.obofoundry.kgcl.model.Edge

getObjectType() - Method in class org.incenp.obofoundry.kgcl.model.EdgeChange

getObsoleteNodeLabelPrefix() - Method in class org.incenp.obofoundry.kgcl.model.Configuration

getObsoleteSubclassOfShadowProperty() - Method in class org.incenp.obofoundry.kgcl.model.Configuration

getObsoletionPolicies() - Method in class org.incenp.obofoundry.kgcl.model.Configuration

getObsoletionWorkflow() - Method in class org.incenp.obofoundry.kgcl.model.Configuration

getOldDatatype() - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

getOldLanguage() - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

getOldObjectType() - Method in class org.incenp.obofoundry.kgcl.model.NodeMove

getOldValue() - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

getOldValueType() - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

getOptions() - Method in class org.incenp.obofoundry.kgcl.robot.ApplyCommand

getOptions() - Method in class org.incenp.obofoundry.kgcl.robot.MintCommand

getOwlType() - Method in class org.incenp.obofoundry.kgcl.model.Node

getOwlType() - Method in class org.incenp.obofoundry.kgcl.model.NodeCreation

getPosition() - Method in class org.incenp.obofoundry.kgcl.KGCLSyntaxError

Gets the position in the line where the error occurred.

getPredicate() - Method in class org.incenp.obofoundry.kgcl.model.Edge

getPredicate() - Method in class org.incenp.obofoundry.kgcl.model.EdgeCreation

getPredicate() - Method in class org.incenp.obofoundry.kgcl.model.EdgeDeletion

getPredicate() - Method in class org.incenp.obofoundry.kgcl.model.EdgeObsoletion

getPredicate() - Method in class org.incenp.obofoundry.kgcl.model.NewMapping

getPredicate() - Method in class org.incenp.obofoundry.kgcl.model.NewMetadataAssertion

getPredicate() - Method in class org.incenp.obofoundry.kgcl.model.RemoveMapping

getPredicate() - Method in class org.incenp.obofoundry.kgcl.model.RemoveMetadataAssertion

getPredicateRepresentation() - Method in class org.incenp.obofoundry.kgcl.model.Edge

getPredicateType() - Method in class org.incenp.obofoundry.kgcl.model.EdgeCreation

getPredicateType() - Method in class org.incenp.obofoundry.kgcl.model.EdgeDeletion

getPrefix() - Method in interface org.incenp.obofoundry.idrange.IIDRangePolicy

Gets the prefix of IDs generated by this policy.

getPrefixName() - Method in interface org.incenp.obofoundry.idrange.IIDRangePolicy

Gets the short name of the policy's prefix.

getProperty() - Method in class org.incenp.obofoundry.kgcl.model.PropertyValue

getPropertyType() - Method in class org.incenp.obofoundry.kgcl.model.Annotation

getPullRequest() - Method in class org.incenp.obofoundry.kgcl.model.Change

getQualifier() - Method in class org.incenp.obofoundry.kgcl.model.NewSynonym

getRange(String) - Method in interface org.incenp.obofoundry.idrange.IIDRangePolicy

Gets the ID range allocated to the specified user.

getReason() - Method in class org.incenp.obofoundry.kgcl.RejectedChange

Gets the reason for rejection.

getRejectedChanges() - Method in interface org.incenp.obofoundry.kgcl.IPatcher

Gets the changes that have been rejected by this patcher.

getRejectedChanges() - Method in class org.incenp.obofoundry.kgcl.owl.OntologyPatcher

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.AddSubsetContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeDefinitionContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangesetContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeSynonymContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteEdgeContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdlistContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.MoveContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewDefinitionContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewEdgeContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewNodeContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewSynonymContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NodeTypeContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.QualifierContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveDefinitionContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSubsetContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSynonymContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RenameContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.StringContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TextContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TypetagContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.UnobsoleteContext

getRuleNames() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

getRuleNames() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

getSeeAlso() - Method in class org.incenp.obofoundry.kgcl.model.Change

getSerializedATN() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

getSerializedATN() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

getStartedAtTime() - Method in class org.incenp.obofoundry.kgcl.model.Activity

getSubject() - Method in class org.incenp.obofoundry.kgcl.model.Edge

getSubject() - Method in class org.incenp.obofoundry.kgcl.model.EdgeCreation

getSubject() - Method in class org.incenp.obofoundry.kgcl.model.EdgeDeletion

getSubject() - Method in class org.incenp.obofoundry.kgcl.model.EdgeObsoletion

getSubjectRepresentation() - Method in class org.incenp.obofoundry.kgcl.model.Edge

getSubjectType() - Method in class org.incenp.obofoundry.kgcl.model.EdgeCreation

getSubjectType() - Method in class org.incenp.obofoundry.kgcl.model.EdgeDeletion

getSuperclass() - Method in class org.incenp.obofoundry.kgcl.model.ClassCreation

getSynonymPredicates() - Method in class org.incenp.obofoundry.kgcl.model.Configuration

getTokenNames() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

Deprecated.

getTokenNames() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

Deprecated.

getType() - Method in class org.incenp.obofoundry.kgcl.model.Change

getUnallocatedIDs() - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

getUpperBound() - Method in class org.incenp.obofoundry.idrange.IDRange

Gets the upper bound (exclusive) of the range,

getUsage() - Method in class org.incenp.obofoundry.kgcl.robot.ApplyCommand

getUsage() - Method in class org.incenp.obofoundry.kgcl.robot.MintCommand

getUsed() - Method in class org.incenp.obofoundry.kgcl.model.Activity

getVocabulary() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

getVocabulary() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

getWasAssociatedWith() - Method in class org.incenp.obofoundry.kgcl.model.Activity

getWasGeneratedBy() - Method in class org.incenp.obofoundry.kgcl.model.Change

getWasInformedBy() - Method in class org.incenp.obofoundry.kgcl.model.Activity

getWasInformedBy() - Method in class org.incenp.obofoundry.kgcl.model.Agent

getWidth() - Method in interface org.incenp.obofoundry.idrange.IIDRangePolicy

Gets the number of digits (padded with leading zeros) in the numerical part of IDs generated with this policy.

H

hasErrors() - Method in class org.incenp.obofoundry.kgcl.KGCLReader

Indicates whether parsing errors occurred.

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.Activity

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.AddNodeToSubset

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.AddToSubset

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.Agent

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.AllowsAutomaticReplacementOfEdges

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.Annotation

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.Change

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.ChangeLanguageElement

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.ChangeMixin

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.ChangeSetSummaryStatistic

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.ClassCreation

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.ClassNode

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.ComplexChange

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.Configuration

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.Creation

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.DatatypeChange

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.DatatypeOrLanguageTagChange

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.Deletion

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.Edge

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.EdgeChange

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.EdgeCreation

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.EdgeDeletion

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.EdgeLogicalInterpretationChange

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.EdgeObsoletion

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.EdgeRewiring

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.InstanceNode

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.LanguageTagChange

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.LogicalAxiomChange

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.LogicalDefinition

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.MappingCreation

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.MappingPredicateChange

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.MappingReplacement

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.MetadataAssertionPredicateChange

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.MetadataAssertionReplacement

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.MultiNodeObsoletion

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NameBecomesSynonym

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NewMapping

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NewMetadataAssertion

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NewSynonym

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NewTextDefinition

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.Node

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NodeAnnotationChange

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NodeAnnotationReplacement

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NodeChange

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NodeCreation

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NodeDeepening

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NodeDeletion

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NodeDirectMerge

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NodeMappingChange

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NodeMetadataAssertionChange

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NodeMove

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NodeObsoletion

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NodeObsoletionWithDirectReplacement

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NodeObsoletionWithNoDirectReplacement

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NodeRename

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NodeShallowing

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NodeSynonymChange

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NodeTextDefinitionChange

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.NodeUnobsoletion

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.ObjectPropertyCreation

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.Obsoletion

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.OntologyElement

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.OntologySubset

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.PlaceUnder

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.PredicateChange

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.PropertyValue

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.ProvElement

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.RemoveFromSubset

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.RemoveMapping

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.RemoveMetadataAssertion

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.RemoveNodeFromSubset

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.RemoveSynonym

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.RemoveTextDefinition

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.RemoveUnder

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.Session

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.SetLanguageForName

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.SubsetMembershipChange

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.SynonymPredicateChange

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.SynonymReplacement

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.TextDefinitionReplacement

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.TextualDiff

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.Transaction

hashCode() - Method in class org.incenp.obofoundry.kgcl.model.Unobsoletion

hasRejectedChanges() - Method in interface org.incenp.obofoundry.kgcl.IPatcher

Indicates whether changes have been rejected by this patcher.

hasRejectedChanges() - Method in class org.incenp.obofoundry.kgcl.owl.OntologyPatcher

I

IAutoIDGenerator - Interface in org.incenp.obofoundry.kgcl

An object that generates automatic IDs for ontological entities.

IChangeVisitor<T> - Interface in org.incenp.obofoundry.kgcl.model

A visitor interface for Change objects.

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.AddSubsetContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeDefinitionContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeSynonymContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteEdgeContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdlistContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.MoveContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewDefinitionContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewEdgeContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewNodeContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewSynonymContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteNoReplacementContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithAlternativeContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithReplacementContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveDefinitionContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSubsetContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSynonymContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RenameContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.UnobsoleteContext

id(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.AddSubsetContext

id(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

id(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

id(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteEdgeContext

id(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdlistContext

id(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.MoveContext

id(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewEdgeContext

id(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithReplacementContext

id(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSubsetContext

IdAsCURIEContext(KGCLParser.IdContext) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsCURIEContext

IdAsIRIContext(KGCLParser.IdContext) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsIRIContext

IdAsLabelContext(KGCLParser.IdContext) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsLabelContext

IdContext() - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdContext

IdContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdContext

idlist() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

idlist() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithAlternativeContext

IdlistContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdlistContext

IDRange - Class in org.incenp.obofoundry.idrange

Represents an ID range for automatically assigned IDs.

IDRange(int, int) - Constructor for class org.incenp.obofoundry.idrange.IDRange

Creates a new instance.

IDRangeHelper - Class in org.incenp.obofoundry.kgcl.robot

IDRangeHelper() - Constructor for class org.incenp.obofoundry.kgcl.robot.IDRangeHelper

IDRangePolicyException - Exception Class in org.incenp.obofoundry.idrange

This exception is thrown when attempting to parse an ID range policy file.

IDRangePolicyException(String) - Constructor for exception class org.incenp.obofoundry.idrange.IDRangePolicyException

Creates a new instance with the specified error message.

IDRangePolicyException(String, Throwable) - Constructor for exception class org.incenp.obofoundry.idrange.IDRangePolicyException

Creates a new instance with the specified error message and cause.

IDRangePolicyParser - Class in org.incenp.obofoundry.idrange

A parser for OBO-style ID range policy files.

IDRangePolicyParser(String) - Constructor for class org.incenp.obofoundry.idrange.IDRangePolicyParser

Creates a new instance to parse the specified file.

IIDRangePolicy - Interface in org.incenp.obofoundry.idrange

Represents an ID range policy, assigning ID ranges to users.

ILabelResolver - Interface in org.incenp.obofoundry.kgcl

An object that can resolve labels into proper entity identifiers.

InstanceNode - Class in org.incenp.obofoundry.kgcl.model

A node that is an individual

InstanceNode() - Constructor for class org.incenp.obofoundry.kgcl.model.InstanceNode

IParseTreeErrorListener - Interface in org.incenp.obofoundry.kgcl.parser

An object that listens to errors that may occur when processing the parse tree of a KGCL changeset.

IPatcher - Interface in org.incenp.obofoundry.kgcl

An object to apply KGCL-described changes to a knowledge graph.

IRI - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

IRI - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

IRI() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsIRIContext

K

KGCLBaseListener - Class in org.incenp.obofoundry.kgcl.parser

This class provides an empty implementation of KGCLListener, which can be extended to create a listener which only needs to handle a subset of the available methods.

KGCLBaseListener() - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

KGCLBaseVisitor<T> - Class in org.incenp.obofoundry.kgcl.parser

This class provides an empty implementation of KGCLVisitor, which can be extended to create a visitor which only needs to handle a subset of the available methods.

KGCLBaseVisitor() - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

KGCLHelper - Class in org.incenp.obofoundry.kgcl

A class providing static helper methods to work with KGCL.

KGCLHelper() - Constructor for class org.incenp.obofoundry.kgcl.KGCLHelper

KGCLLexer - Class in org.incenp.obofoundry.kgcl.parser

KGCLLexer(CharStream) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLLexer

KGCLListener - Interface in org.incenp.obofoundry.kgcl.parser

This interface defines a complete listener for a parse tree produced by KGCLParser.

KGCLParser - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser(TokenStream) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser

KGCLParser.AddSubsetContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.ChangeAnnotationContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.ChangeContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.ChangeDefinitionContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.ChangePredicateContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.ChangesetContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.ChangeSynonymContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.DeleteContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.DeleteEdgeContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.IdAsCURIEContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.IdAsIRIContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.IdAsLabelContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.IdContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.IdlistContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.MoveContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.NewDefinitionContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.NewEdgeContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.NewNodeContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.NewSynonymContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.NodeTypeContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.ObsoleteContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.ObsoleteNoReplacementContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.ObsoleteWithAlternativeContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.ObsoleteWithReplacementContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.QualifierContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.RemoveDefinitionContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.RemoveSubsetContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.RemoveSynonymContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.RenameContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.StringContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.TextContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.TypetagContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.UnobsoleteContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLReader - Class in org.incenp.obofoundry.kgcl

A parser to read a KGCL program from a file or a file-like source.

KGCLReader() - Constructor for class org.incenp.obofoundry.kgcl.KGCLReader

Creates a new instance without an input source.

KGCLReader(File) - Constructor for class org.incenp.obofoundry.kgcl.KGCLReader

Creates a new instance to read from a file.

KGCLReader(InputStream) - Constructor for class org.incenp.obofoundry.kgcl.KGCLReader

Creates a new instance to read from a stream.

KGCLReader(Reader) - Constructor for class org.incenp.obofoundry.kgcl.KGCLReader

Creates a new instance to read from a reader object.

KGCLReader(String) - Constructor for class org.incenp.obofoundry.kgcl.KGCLReader

Creates a new instance to read from a file.

KGCLSyntaxError - Class in org.incenp.obofoundry.kgcl

A syntax error encountered when parsing a KGCL program.

KGCLSyntaxError(int, int, String) - Constructor for class org.incenp.obofoundry.kgcl.KGCLSyntaxError

Creates a new instance.

KGCLTextTranslator - Class in org.incenp.obofoundry.kgcl

A visitor to convert a list of KGCL Change objects into their textual representation in the KGCL language.

KGCLTextTranslator() - Constructor for class org.incenp.obofoundry.kgcl.KGCLTextTranslator

Creates a new instance without a prefix manager.

KGCLTextTranslator(PrefixManager) - Constructor for class org.incenp.obofoundry.kgcl.KGCLTextTranslator

Creates a new instance with the specified prefix manager.

KGCLVisitor<T> - Interface in org.incenp.obofoundry.kgcl.parser

This interface defines a complete generic visitor for a parse tree produced by KGCLParser.

KGCLWriter - Class in org.incenp.obofoundry.kgcl

A writer to serialise KGCL change objects into a KGCL program that is written to a file or file-like sink.

KGCLWriter(File) - Constructor for class org.incenp.obofoundry.kgcl.KGCLWriter

Creates a new instance to write to a file.

KGCLWriter(OutputStream) - Constructor for class org.incenp.obofoundry.kgcl.KGCLWriter

Creates a new instance to write to a stream.

KGCLWriter(Writer) - Constructor for class org.incenp.obofoundry.kgcl.KGCLWriter

Creates a new instance to write to a character stream writer.

KGCLWriter(String) - Constructor for class org.incenp.obofoundry.kgcl.KGCLWriter

Creates a new instance to write to a file.

L

label - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewNodeContext

lang - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TextContext

LANGTAG - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

LANGTAG - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

LANGTAG() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TextContext

LanguageTagChange - Class in org.incenp.obofoundry.kgcl.model

None

LanguageTagChange() - Constructor for class org.incenp.obofoundry.kgcl.model.LanguageTagChange

LogicalAxiomChange - Class in org.incenp.obofoundry.kgcl.model

A simple change where a logical axiom is changed, where the logical axiom cannot be represented as an edge

LogicalAxiomChange() - Constructor for class org.incenp.obofoundry.kgcl.model.LogicalAxiomChange

LogicalDefinition - Class in org.incenp.obofoundry.kgcl.model

None

LogicalDefinition() - Constructor for class org.incenp.obofoundry.kgcl.model.LogicalDefinition

lowerBound - Variable in class org.incenp.obofoundry.kgcl.SequentialIDGenerator

M

main(String[]) - Method in class org.incenp.obofoundry.kgcl.robot.ApplyCommand

main(String[]) - Method in class org.incenp.obofoundry.kgcl.robot.MintCommand

main(String[]) - Static method in class org.incenp.obofoundry.kgcl.robot.StandaloneRobot

MappingCreation - Class in org.incenp.obofoundry.kgcl.model

A specific kind of edge creation in which the created edge is a mapping.

MappingCreation() - Constructor for class org.incenp.obofoundry.kgcl.model.MappingCreation

MappingPredicateChange - Class in org.incenp.obofoundry.kgcl.model

A node mapping change where the predicate of a mapping is changed.

MappingPredicateChange() - Constructor for class org.incenp.obofoundry.kgcl.model.MappingPredicateChange

MappingReplacement - Class in org.incenp.obofoundry.kgcl.model

A node mapping change where the object of a mapping is changed

MappingReplacement() - Constructor for class org.incenp.obofoundry.kgcl.model.MappingReplacement

maybeGetIDGenerator(OWLOntology, String, String, String[], boolean) - Static method in class org.incenp.obofoundry.kgcl.robot.IDRangeHelper

Gets an ID generator initialised with data from the specified range file, or a default file.

MetadataAssertionPredicateChange - Class in org.incenp.obofoundry.kgcl.model

A node metadata assertion change where the predicate of a metadata assertion is changed.

MetadataAssertionPredicateChange() - Constructor for class org.incenp.obofoundry.kgcl.model.MetadataAssertionPredicateChange

MetadataAssertionReplacement - Class in org.incenp.obofoundry.kgcl.model

A node metadata assertion change where the object of a metadata assertion is changed

MetadataAssertionReplacement() - Constructor for class org.incenp.obofoundry.kgcl.model.MetadataAssertionReplacement

MintCommand - Class in org.incenp.obofoundry.kgcl.robot

MintCommand() - Constructor for class org.incenp.obofoundry.kgcl.robot.MintCommand

modeNames - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

move() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

move() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

MoveContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.MoveContext

MultiNodeObsoletion - Class in org.incenp.obofoundry.kgcl.model

A complex change consisting of multiple obsoletions.

MultiNodeObsoletion() - Constructor for class org.incenp.obofoundry.kgcl.model.MultiNodeObsoletion

N

NameBecomesSynonym - Class in org.incenp.obofoundry.kgcl.model

A node synonym where the name NAME of an node NODE moves to a synonym, and NODE receives a new name.

NameBecomesSynonym() - Constructor for class org.incenp.obofoundry.kgcl.model.NameBecomesSynonym

NAMED_INVIDIDUAL - Enum constant in enum class org.incenp.obofoundry.kgcl.model.OwlType

new_annotation - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

new_definition - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeDefinitionContext

new_definition - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewDefinitionContext

new_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithReplacementContext

new_label - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RenameContext

new_parent - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.MoveContext

new_predicate_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

new_synonym - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeSynonymContext

newDefinition() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

newDefinition() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

NewDefinitionContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewDefinitionContext

newEdge() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

newEdge() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

NewEdgeContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewEdgeContext

NewMapping - Class in org.incenp.obofoundry.kgcl.model

A node mapping change where a mapping is added to a node

NewMapping() - Constructor for class org.incenp.obofoundry.kgcl.model.NewMapping

NewMetadataAssertion - Class in org.incenp.obofoundry.kgcl.model

A node metadata assertion change where a metadata assertion is added to a node

NewMetadataAssertion() - Constructor for class org.incenp.obofoundry.kgcl.model.NewMetadataAssertion

newNode() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

newNode() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

NewNodeContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewNodeContext

newSynonym() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

newSynonym() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

NewSynonym - Class in org.incenp.obofoundry.kgcl.model

A node synonym change where a de-novo synonym is created

NewSynonym() - Constructor for class org.incenp.obofoundry.kgcl.model.NewSynonym

NewSynonymContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewSynonymContext

NewTextDefinition - Class in org.incenp.obofoundry.kgcl.model

A node change where a de-novo text definition is created

NewTextDefinition() - Constructor for class org.incenp.obofoundry.kgcl.model.NewTextDefinition

nextID() - Method in interface org.incenp.obofoundry.kgcl.IAutoIDGenerator

Generates a new automatic ID.

nextID() - Method in class org.incenp.obofoundry.kgcl.RandomizedIDGenerator

nextID() - Method in class org.incenp.obofoundry.kgcl.SequentialIDGenerator

NL - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

NL - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

NL() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangesetContext

NL(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangesetContext

Node - Class in org.incenp.obofoundry.kgcl.model

Any named entity in an ontology.

Node() - Constructor for class org.incenp.obofoundry.kgcl.model.Node

node_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.AddSubsetContext

node_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSubsetContext

NodeAnnotationChange - Class in org.incenp.obofoundry.kgcl.model

A node change where the change alters node properties/annotations.

NodeAnnotationChange() - Constructor for class org.incenp.obofoundry.kgcl.model.NodeAnnotationChange

NodeAnnotationReplacement - Class in org.incenp.obofoundry.kgcl.model

A node annotation change where the change replaces a particular property value.

NodeAnnotationReplacement() - Constructor for class org.incenp.obofoundry.kgcl.model.NodeAnnotationReplacement

NodeChange - Class in org.incenp.obofoundry.kgcl.model

A simple change where the change is about a node

NodeChange() - Constructor for class org.incenp.obofoundry.kgcl.model.NodeChange

NodeCreation - Class in org.incenp.obofoundry.kgcl.model

a node change in which a new node is created

NodeCreation() - Constructor for class org.incenp.obofoundry.kgcl.model.NodeCreation

NodeDeepening - Class in org.incenp.obofoundry.kgcl.model

A node move in which a node where the destination is a proper descendant of the original location.

NodeDeepening() - Constructor for class org.incenp.obofoundry.kgcl.model.NodeDeepening

NodeDeletion - Class in org.incenp.obofoundry.kgcl.model

Deletion of a node from the graph.

NodeDeletion() - Constructor for class org.incenp.obofoundry.kgcl.model.NodeDeletion

NodeDirectMerge - Class in org.incenp.obofoundry.kgcl.model

An obsoletion change in which all metadata (including name/label) from the source node is deleted and added to the target node, and edges can automatically be rewired to point to the target node

NodeDirectMerge() - Constructor for class org.incenp.obofoundry.kgcl.model.NodeDirectMerge

NodeMappingChange - Class in org.incenp.obofoundry.kgcl.model

A node change where the mappings for that node are altered

NodeMappingChange() - Constructor for class org.incenp.obofoundry.kgcl.model.NodeMappingChange

NodeMetadataAssertionChange - Class in org.incenp.obofoundry.kgcl.model

A node change where the metadata assertion (OWL annotations) for that node are altered

NodeMetadataAssertionChange() - Constructor for class org.incenp.obofoundry.kgcl.model.NodeMetadataAssertionChange

NodeMove - Class in org.incenp.obofoundry.kgcl.model

A node move is a combination of deleting a parent edge and adding a parent edge, where the predicate is preserved and the object/parent node changes

NodeMove() - Constructor for class org.incenp.obofoundry.kgcl.model.NodeMove

NodeObsoletion - Class in org.incenp.obofoundry.kgcl.model

Obsoletion of a node deprecates usage of that node, but does not delete it.

NodeObsoletion() - Constructor for class org.incenp.obofoundry.kgcl.model.NodeObsoletion

NodeObsoletionWithDirectReplacement - Class in org.incenp.obofoundry.kgcl.model

An obsoletion change in which information from the obsoleted node is selectively copied to a single target, and edges can automatically be rewired to point to the target node

NodeObsoletionWithDirectReplacement() - Constructor for class org.incenp.obofoundry.kgcl.model.NodeObsoletionWithDirectReplacement

NodeObsoletionWithNoDirectReplacement - Class in org.incenp.obofoundry.kgcl.model

An obsoletion change in which there is no direct replacement

NodeObsoletionWithNoDirectReplacement() - Constructor for class org.incenp.obofoundry.kgcl.model.NodeObsoletionWithNoDirectReplacement

NodeRename - Class in org.incenp.obofoundry.kgcl.model

A node change where the name (aka rdfs:label) of the node changes

NodeRename() - Constructor for class org.incenp.obofoundry.kgcl.model.NodeRename

NodeShallowing - Class in org.incenp.obofoundry.kgcl.model

The opposite of node deepening

NodeShallowing() - Constructor for class org.incenp.obofoundry.kgcl.model.NodeShallowing

NodeSynonymChange - Class in org.incenp.obofoundry.kgcl.model

None

NodeSynonymChange() - Constructor for class org.incenp.obofoundry.kgcl.model.NodeSynonymChange

NodeTextDefinitionChange - Class in org.incenp.obofoundry.kgcl.model

A node change where the text definition is changed

NodeTextDefinitionChange() - Constructor for class org.incenp.obofoundry.kgcl.model.NodeTextDefinitionChange

nodeType() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewNodeContext

nodeType() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

NodeTypeContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.NodeTypeContext

NodeUnobsoletion - Class in org.incenp.obofoundry.kgcl.model

unobsoletion of a node deprecates usage of that node.

NodeUnobsoletion() - Constructor for class org.incenp.obofoundry.kgcl.model.NodeUnobsoletion

O

object_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

object_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteEdgeContext

object_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewEdgeContext

OBJECT_PROPERTY - Enum constant in enum class org.incenp.obofoundry.kgcl.model.OwlType

ObjectPropertyCreation - Class in org.incenp.obofoundry.kgcl.model

A node creation where the owl type is 'ObjectProperty'

ObjectPropertyCreation() - Constructor for class org.incenp.obofoundry.kgcl.model.ObjectPropertyCreation

obsolete() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

obsolete() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

ObsoleteContext() - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteContext

ObsoleteContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteContext

ObsoleteNoReplacementContext(KGCLParser.ObsoleteContext) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteNoReplacementContext

ObsoleteWithAlternativeContext(KGCLParser.ObsoleteContext) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithAlternativeContext

ObsoleteWithReplacementContext(KGCLParser.ObsoleteContext) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithReplacementContext

Obsoletion - Class in org.incenp.obofoundry.kgcl.model

Obsoletion of an element deprecates usage of that element, but does not delete that element.

Obsoletion() - Constructor for class org.incenp.obofoundry.kgcl.model.Obsoletion

old_annotation - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

old_definition - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeDefinitionContext

old_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteNoReplacementContext

old_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithAlternativeContext

old_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithReplacementContext

old_label - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RenameContext

old_parent - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.MoveContext

old_predicate_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

old_synonym - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeSynonymContext

onReject(Change, String, Object...) - Method in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

Called internally whenever a change is rejected.

ontology - Variable in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

ontology - Variable in class org.incenp.obofoundry.kgcl.SequentialIDGenerator

OntologyBasedLabelResolver - Class in org.incenp.obofoundry.kgcl.owl

An object to resolve labels into identifiers using the rdfs:label annotations of an ontology’s entities.

OntologyBasedLabelResolver(OWLOntology) - Constructor for class org.incenp.obofoundry.kgcl.owl.OntologyBasedLabelResolver

Creates a new instance to resolve labels based on the contents of the provided ontology.

OntologyElement - Class in org.incenp.obofoundry.kgcl.model

Any component of an ontology or knowledge graph

OntologyElement() - Constructor for class org.incenp.obofoundry.kgcl.model.OntologyElement

OntologyPatcher - Class in org.incenp.obofoundry.kgcl.owl

A class to apply KGCL-described changes to a OWL API ontology.

OntologyPatcher(OWLOntology, OWLReasoner) - Constructor for class org.incenp.obofoundry.kgcl.owl.OntologyPatcher

Creates a new instance to update the specified ontology.

OntologySubset - Class in org.incenp.obofoundry.kgcl.model

None

OntologySubset() - Constructor for class org.incenp.obofoundry.kgcl.model.OntologySubset

org.incenp.obofoundry.idrange - package org.incenp.obofoundry.idrange

org.incenp.obofoundry.kgcl - package org.incenp.obofoundry.kgcl

org.incenp.obofoundry.kgcl.model - package org.incenp.obofoundry.kgcl.model

org.incenp.obofoundry.kgcl.owl - package org.incenp.obofoundry.kgcl.owl

org.incenp.obofoundry.kgcl.parser - package org.incenp.obofoundry.kgcl.parser

org.incenp.obofoundry.kgcl.robot - package org.incenp.obofoundry.kgcl.robot

OWLTranslator - Class in org.incenp.obofoundry.kgcl.owl

Base class to translate KGCL change objects into OWL axioms.

OWLTranslator(OWLOntology, OWLReasoner) - Constructor for class org.incenp.obofoundry.kgcl.owl.OWLTranslator

Creates a new instance for the specified ontology.

OwlType - Enum Class in org.incenp.obofoundry.kgcl.model

Represents the type of a node, when the knowledge graph is backed by an OWL ontology.

P

parse() - Method in class org.incenp.obofoundry.idrange.IDRangePolicyParser

Parses the policy file.

parse(File, Map<String, String>, List<KGCLSyntaxError>, ILabelResolver) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Parses KGCL from a file and collects syntax errors.

parse(File, PrefixManager) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Parses KGCL from a file.

parse(File, PrefixManager, List<KGCLSyntaxError>) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Parses KGCL from a file and collects syntax errors.

parse(File, PrefixManager, List<KGCLSyntaxError>, ILabelResolver) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Parses KGCL from a file and collects syntax errors.

parse(String, Map<String, String>, List<KGCLSyntaxError>, ILabelResolver) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Parses KGCL from a string and collects syntax errors.

parse(String, PrefixManager) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Parses KGCL from a string.

parse(String, PrefixManager, List<KGCLSyntaxError>) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Parses KGCL from a string and collects syntax errors.

parse(String, PrefixManager, List<KGCLSyntaxError>, ILabelResolver) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Parses KGCL from a string and collects syntax errors.

ParseTree2ChangeVisitor - Class in org.incenp.obofoundry.kgcl.parser

A visitor to converts the ANTLR parse tree of a KGCL changeset into a list of Change objects.

ParseTree2ChangeVisitor(PrefixManager, ILabelResolver, List<Change>) - Constructor for class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

Creates a new visitor with the specified prefix manager and list to store the changes.

parseTreeError(int, int, String) - Method in interface org.incenp.obofoundry.kgcl.parser.IParseTreeErrorListener

Called upon encountering a parse tree error.

PlaceUnder - Class in org.incenp.obofoundry.kgcl.model

An edge creation where the predicate is owl:subClassOf

PlaceUnder() - Constructor for class org.incenp.obofoundry.kgcl.model.PlaceUnder

predicate_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

predicate_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteEdgeContext

predicate_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewEdgeContext

PredicateChange - Class in org.incenp.obofoundry.kgcl.model

An edge change where the predicate (relationship type) is modified.

PredicateChange() - Constructor for class org.incenp.obofoundry.kgcl.model.PredicateChange

PropertyValue - Class in org.incenp.obofoundry.kgcl.model

a property-value pair

PropertyValue() - Constructor for class org.incenp.obofoundry.kgcl.model.PropertyValue

ProvElement - Class in org.incenp.obofoundry.kgcl.model

A grouping for prov elements

ProvElement() - Constructor for class org.incenp.obofoundry.kgcl.model.ProvElement

ProvisionalOWLTranslator - Class in org.incenp.obofoundry.kgcl.owl

ProvisionalOWLTranslator(OWLOntology, OWLReasoner) - Constructor for class org.incenp.obofoundry.kgcl.owl.ProvisionalOWLTranslator

Q

qualifier() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewSynonymContext

qualifier() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

QualifierContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.QualifierContext

R

RandomizedIDGenerator - Class in org.incenp.obofoundry.kgcl

Generates numerical IDs within a given a range.

RandomizedIDGenerator(OWLOntology, String, int, int) - Constructor for class org.incenp.obofoundry.kgcl.RandomizedIDGenerator

Creates a new instance.

read() - Method in class org.incenp.obofoundry.kgcl.KGCLReader

Parses the KGCL program from the underlying source.

read(String) - Method in class org.incenp.obofoundry.kgcl.KGCLReader

Parses the KGCL program from the specified string.

read(String, boolean) - Method in class org.incenp.obofoundry.kgcl.KGCLReader

Parses the KGCL program from the specified string.

reallocate(List<Change>) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

Assigns automatic IDs in the given list of change objects.

reasoner - Variable in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

RecursiveClassExpressionVisitorBase - Class in org.incenp.obofoundry.kgcl.owl

A helper class to apply arbitrary transformations to class expressions.

RecursiveClassExpressionVisitorBase(OWLDataFactory) - Constructor for class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

rejected(Change, String) - Method in class org.incenp.obofoundry.kgcl.owl.OntologyPatcher

This method is called whenever a change is rejected.

rejected(Change, String) - Method in interface org.incenp.obofoundry.kgcl.RejectedChangeListener

This method is called when a change cannot be applied to an ontology.

RejectedChange - Class in org.incenp.obofoundry.kgcl

A change that could not be applied to the intended target graph.

RejectedChange(Change, String) - Constructor for class org.incenp.obofoundry.kgcl.RejectedChange

Creates a new instance.

RejectedChangeListener - Interface in org.incenp.obofoundry.kgcl

Listener for “rejected change” events – when OWLTranslator cannot translate a change for any reason.

removeDefinition() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

removeDefinition() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RemoveDefinitionContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveDefinitionContext

RemoveFromSubset - Class in org.incenp.obofoundry.kgcl.model

removing an element from a subset

RemoveFromSubset() - Constructor for class org.incenp.obofoundry.kgcl.model.RemoveFromSubset

RemoveMapping - Class in org.incenp.obofoundry.kgcl.model

A node mapping change where a mapping is deleted

RemoveMapping() - Constructor for class org.incenp.obofoundry.kgcl.model.RemoveMapping

RemoveMetadataAssertion - Class in org.incenp.obofoundry.kgcl.model

A node metadata assertion change where a metadata assertion is deleted

RemoveMetadataAssertion() - Constructor for class org.incenp.obofoundry.kgcl.model.RemoveMetadataAssertion

RemoveNodeFromSubset - Class in org.incenp.obofoundry.kgcl.model

Removes a node from a subset, by removing an annotation

RemoveNodeFromSubset() - Constructor for class org.incenp.obofoundry.kgcl.model.RemoveNodeFromSubset

removeSubset() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

removeSubset() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RemoveSubsetContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSubsetContext

removeSynonym() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

removeSynonym() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RemoveSynonym - Class in org.incenp.obofoundry.kgcl.model

A node synonym change where a synonym is deleted

RemoveSynonym() - Constructor for class org.incenp.obofoundry.kgcl.model.RemoveSynonym

RemoveSynonymContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSynonymContext

RemoveTextDefinition - Class in org.incenp.obofoundry.kgcl.model

A node change where a text definition is deleted

RemoveTextDefinition() - Constructor for class org.incenp.obofoundry.kgcl.model.RemoveTextDefinition

RemoveUnder - Class in org.incenp.obofoundry.kgcl.model

An edge deletion where the predicate is owl:subClassOf

RemoveUnder() - Constructor for class org.incenp.obofoundry.kgcl.model.RemoveUnder

rename() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

rename() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RenameContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.RenameContext

resolve(String) - Method in interface org.incenp.obofoundry.kgcl.ILabelResolver

Finds the identifier corresponding to the given label.

resolve(String) - Method in class org.incenp.obofoundry.kgcl.owl.OntologyBasedLabelResolver

resolve(String) - Method in class org.incenp.obofoundry.kgcl.SimpleLabelResolver

RESTRICTION - Enum constant in enum class org.incenp.obofoundry.kgcl.model.EdgeType

An edge representing an existential restriction between two classes.

RULE_addSubset - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_change - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_changeAnnotation - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_changeDefinition - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_changePredicate - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_changeset - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_changeSynonym - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_delete - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_deleteEdge - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_id - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_idlist - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_move - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_newDefinition - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_newEdge - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_newNode - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_newSynonym - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_nodeType - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_obsolete - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_qualifier - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_removeDefinition - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_removeSubset - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_removeSynonym - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_rename - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_string - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_text - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_typetag - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_unobsolete - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

ruleNames - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

ruleNames - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

S

SequentialIDGenerator - Class in org.incenp.obofoundry.kgcl

Generates numerical IDs sequentially within a given range.

SequentialIDGenerator(OWLOntology, String, int, int) - Constructor for class org.incenp.obofoundry.kgcl.SequentialIDGenerator

Creates a new instance.

Session - Class in org.incenp.obofoundry.kgcl.model

A session consists of a set of change sets bundled with the activities that generated those change sets

Session() - Constructor for class org.incenp.obofoundry.kgcl.model.Session

setAboutEdge(Edge) - Method in class org.incenp.obofoundry.kgcl.model.EdgeChange

setAboutNode(Node) - Method in class org.incenp.obofoundry.kgcl.model.NodeChange

setAboutNodeRepresentation(String) - Method in class org.incenp.obofoundry.kgcl.model.NodeChange

setActedOnBehalfOf(Agent) - Method in class org.incenp.obofoundry.kgcl.model.Agent

setActivitySet(List<Activity>) - Method in class org.incenp.obofoundry.kgcl.model.Session

setAnnotationProperty(String) - Method in class org.incenp.obofoundry.kgcl.model.NodeAnnotationChange

setAnnotationPropertyType(String) - Method in class org.incenp.obofoundry.kgcl.model.NodeAnnotationChange

setAnnotationSet(Annotation) - Method in class org.incenp.obofoundry.kgcl.model.Annotation

setAnnotationSet(Annotation) - Method in class org.incenp.obofoundry.kgcl.model.Edge

setAnnotationSet(Annotation) - Method in class org.incenp.obofoundry.kgcl.model.EdgeCreation

setAnnotationSet(Annotation) - Method in class org.incenp.obofoundry.kgcl.model.EdgeDeletion

setAnnotationSet(Annotation) - Method in class org.incenp.obofoundry.kgcl.model.EdgeObsoletion

setAnnotationSet(Annotation) - Method in class org.incenp.obofoundry.kgcl.model.Node

setAnnotationSet(Annotation) - Method in class org.incenp.obofoundry.kgcl.model.NodeCreation

setChangeDate(ZonedDateTime) - Method in class org.incenp.obofoundry.kgcl.model.Change

setChangeSet(List<Change>) - Method in class org.incenp.obofoundry.kgcl.model.ComplexChange

setChangeSet(List<Change>) - Method in class org.incenp.obofoundry.kgcl.model.Session

setChangeSet(List<Change>) - Method in class org.incenp.obofoundry.kgcl.model.Transaction

setContributor(String) - Method in class org.incenp.obofoundry.kgcl.model.Change

setContributorPredicate(String) - Method in class org.incenp.obofoundry.kgcl.model.Configuration

setCreator(String) - Method in class org.incenp.obofoundry.kgcl.model.Change

setCreatorPredicate(String) - Method in class org.incenp.obofoundry.kgcl.model.Configuration

setDatatype(String) - Method in class org.incenp.obofoundry.kgcl.model.EdgeChange

setDefinitionPredicate(String) - Method in class org.incenp.obofoundry.kgcl.model.Configuration

setDescription(String) - Method in class org.incenp.obofoundry.kgcl.model.Activity

setEndedAtTime(String) - Method in class org.incenp.obofoundry.kgcl.model.Activity

setFiller(String) - Method in class org.incenp.obofoundry.kgcl.model.PropertyValue

setFillerType(String) - Method in class org.incenp.obofoundry.kgcl.model.Annotation

setHasDirectReplacement(Node) - Method in class org.incenp.obofoundry.kgcl.model.NodeObsoletion

setHasNondirectReplacement(List<Node>) - Method in class org.incenp.obofoundry.kgcl.model.NodeObsoletion

setHasTextualDiff(TextualDiff) - Method in class org.incenp.obofoundry.kgcl.model.NodeRename

setHasTextualDiff(TextualDiff) - Method in class org.incenp.obofoundry.kgcl.model.SynonymPredicateChange

setHasTextualDiff(TextualDiff) - Method in class org.incenp.obofoundry.kgcl.model.SynonymReplacement

setHasTextualDiff(TextualDiff) - Method in class org.incenp.obofoundry.kgcl.model.TextDefinitionReplacement

setHasUndo(Change) - Method in class org.incenp.obofoundry.kgcl.model.Change

setId(String) - Method in class org.incenp.obofoundry.kgcl.model.Activity

setId(String) - Method in class org.incenp.obofoundry.kgcl.model.Agent

setId(String) - Method in class org.incenp.obofoundry.kgcl.model.Change

setId(String) - Method in class org.incenp.obofoundry.kgcl.model.Node

setInSubset(OntologySubset) - Method in class org.incenp.obofoundry.kgcl.model.AddNodeToSubset

setInSubset(OntologySubset) - Method in class org.incenp.obofoundry.kgcl.model.RemoveNodeFromSubset

setInSubset(OntologySubset) - Method in class org.incenp.obofoundry.kgcl.model.SubsetMembershipChange

setLabelResolver(ILabelResolver) - Method in class org.incenp.obofoundry.kgcl.KGCLReader

Sets the label resolver.

setLanguage(String) - Method in class org.incenp.obofoundry.kgcl.model.EdgeChange

setLanguage(String) - Method in class org.incenp.obofoundry.kgcl.model.NodeChange

SetLanguageForName - Class in org.incenp.obofoundry.kgcl.model

A node change where the string value for the name is unchanged but the language tag is set

SetLanguageForName() - Constructor for class org.incenp.obofoundry.kgcl.model.SetLanguageForName

setMainSynonymPredicate(String) - Method in class org.incenp.obofoundry.kgcl.model.Configuration

setName(String) - Method in class org.incenp.obofoundry.kgcl.model.Node

setName(String) - Method in class org.incenp.obofoundry.kgcl.model.NodeCreation

setNamePredicate(String) - Method in class org.incenp.obofoundry.kgcl.model.Configuration

setNewDatatype(String) - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

setNewLanguage(String) - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

setNewObjectType(String) - Method in class org.incenp.obofoundry.kgcl.model.NodeMove

setNewValue(String) - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

setNewValueType(String) - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

setNodeId(Node) - Method in class org.incenp.obofoundry.kgcl.model.NodeCreation

setObject(Node) - Method in class org.incenp.obofoundry.kgcl.model.Edge

setObject(Node) - Method in class org.incenp.obofoundry.kgcl.model.EdgeCreation

setObject(Node) - Method in class org.incenp.obofoundry.kgcl.model.EdgeDeletion

setObject(Node) - Method in class org.incenp.obofoundry.kgcl.model.EdgeObsoletion

setObject(Node) - Method in class org.incenp.obofoundry.kgcl.model.NewMapping

setObject(Node) - Method in class org.incenp.obofoundry.kgcl.model.NewMetadataAssertion

setObject(Node) - Method in class org.incenp.obofoundry.kgcl.model.RemoveMapping

setObject(Node) - Method in class org.incenp.obofoundry.kgcl.model.RemoveMetadataAssertion

setObjectRepresentation(String) - Method in class org.incenp.obofoundry.kgcl.model.Edge

setObjectType(String) - Method in class org.incenp.obofoundry.kgcl.model.EdgeChange

setObsoleteNodeLabelPrefix(String) - Method in class org.incenp.obofoundry.kgcl.model.Configuration

setObsoleteSubclassOfShadowProperty(String) - Method in class org.incenp.obofoundry.kgcl.model.Configuration

setObsoletionPolicies(List<String>) - Method in class org.incenp.obofoundry.kgcl.model.Configuration

setObsoletionWorkflow(String) - Method in class org.incenp.obofoundry.kgcl.model.Configuration

setOldDatatype(String) - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

setOldLanguage(String) - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

setOldObjectType(String) - Method in class org.incenp.obofoundry.kgcl.model.NodeMove

setOldValue(String) - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

setOldValueType(String) - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

setOwlType(OwlType) - Method in class org.incenp.obofoundry.kgcl.model.Node

setOwlType(OwlType) - Method in class org.incenp.obofoundry.kgcl.model.NodeCreation

setPredicate(Node) - Method in class org.incenp.obofoundry.kgcl.model.Edge

setPredicate(Node) - Method in class org.incenp.obofoundry.kgcl.model.EdgeCreation

setPredicate(Node) - Method in class org.incenp.obofoundry.kgcl.model.EdgeDeletion

setPredicate(Node) - Method in class org.incenp.obofoundry.kgcl.model.EdgeObsoletion

setPredicate(Node) - Method in class org.incenp.obofoundry.kgcl.model.NewMapping

setPredicate(Node) - Method in class org.incenp.obofoundry.kgcl.model.NewMetadataAssertion

setPredicate(Node) - Method in class org.incenp.obofoundry.kgcl.model.RemoveMapping

setPredicate(Node) - Method in class org.incenp.obofoundry.kgcl.model.RemoveMetadataAssertion

setPredicateRepresentation(String) - Method in class org.incenp.obofoundry.kgcl.model.Edge

setPredicateType(String) - Method in class org.incenp.obofoundry.kgcl.model.EdgeCreation

setPredicateType(String) - Method in class org.incenp.obofoundry.kgcl.model.EdgeDeletion

setPrefixManager(OWLOntology) - Method in class org.incenp.obofoundry.kgcl.KGCLReader

Deprecated.

Using an ontology as the prefix manager is no longer recommended. Provide the reader with an explicit PrefixManager (with KGCLReader.setPrefixManager(PrefixManager)) instead.

setPrefixManager(OWLOntology) - Method in class org.incenp.obofoundry.kgcl.KGCLWriter

Deprecated.

Using an ontology as the prefix manager is no longer recommended. Provide the reader with an explicit PrefixManager (with KGCLWriter.setPrefixManager(PrefixManager)) instead.

setPrefixManager(PrefixManager) - Method in class org.incenp.obofoundry.kgcl.KGCLReader

Sets the prefix manager to use to expand short identifiers.

setPrefixManager(PrefixManager) - Method in class org.incenp.obofoundry.kgcl.KGCLWriter

Sets the prefix manager to use to compact identifiers.

setPrefixMap(Map<String, String>) - Method in class org.incenp.obofoundry.kgcl.KGCLReader

Sets the prefix map to use to resolve short identifiers.

setPrefixMap(Map<String, String>) - Method in class org.incenp.obofoundry.kgcl.KGCLWriter

Sets the prefix map to use to compact identifiers.

setProperty(Node) - Method in class org.incenp.obofoundry.kgcl.model.PropertyValue

setPropertyType(String) - Method in class org.incenp.obofoundry.kgcl.model.Annotation

setProvisional(boolean) - Method in class org.incenp.obofoundry.kgcl.owl.OntologyPatcher

Sets this patcher object in "provisional" mode, where changes are recorded in the ontology rather applied.

setPullRequest(String) - Method in class org.incenp.obofoundry.kgcl.model.Change

setQualifier(String) - Method in class org.incenp.obofoundry.kgcl.model.NewSynonym

setSeeAlso(String) - Method in class org.incenp.obofoundry.kgcl.model.Change

setStartedAtTime(String) - Method in class org.incenp.obofoundry.kgcl.model.Activity

setSubject(Node) - Method in class org.incenp.obofoundry.kgcl.model.Edge

setSubject(Node) - Method in class org.incenp.obofoundry.kgcl.model.EdgeCreation

setSubject(Node) - Method in class org.incenp.obofoundry.kgcl.model.EdgeDeletion

setSubject(Node) - Method in class org.incenp.obofoundry.kgcl.model.EdgeObsoletion

setSubjectRepresentation(String) - Method in class org.incenp.obofoundry.kgcl.model.Edge

setSubjectType(String) - Method in class org.incenp.obofoundry.kgcl.model.EdgeCreation

setSubjectType(String) - Method in class org.incenp.obofoundry.kgcl.model.EdgeDeletion

setSuperclass(Node) - Method in class org.incenp.obofoundry.kgcl.model.ClassCreation

setSynonymPredicates(String) - Method in class org.incenp.obofoundry.kgcl.model.Configuration

setType(String) - Method in class org.incenp.obofoundry.kgcl.model.Change

setUsed(String) - Method in class org.incenp.obofoundry.kgcl.model.Activity

setWasAssociatedWith(Agent) - Method in class org.incenp.obofoundry.kgcl.model.Activity

setWasGeneratedBy(Activity) - Method in class org.incenp.obofoundry.kgcl.model.Change

setWasInformedBy(Activity) - Method in class org.incenp.obofoundry.kgcl.model.Activity

setWasInformedBy(Activity) - Method in class org.incenp.obofoundry.kgcl.model.Agent

SimpleChange - Class in org.incenp.obofoundry.kgcl.model

A change that is about a single ontology element

SimpleChange() - Constructor for class org.incenp.obofoundry.kgcl.model.SimpleChange

SimpleLabelResolver - Class in org.incenp.obofoundry.kgcl

A basic implementation of the ILabelResolver interface.

SimpleLabelResolver() - Constructor for class org.incenp.obofoundry.kgcl.SimpleLabelResolver

SQ_STRING - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

SQ_STRING - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

SQ_STRING() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.StringContext

StandaloneRobot - Class in org.incenp.obofoundry.kgcl.robot

This class provides a version of the ROBOT tool that includes the KGCL 'apply' command.

StandaloneRobot() - Constructor for class org.incenp.obofoundry.kgcl.robot.StandaloneRobot

string() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsLabelContext

string() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

string() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TextContext

StringContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.StringContext

SUBCLASS - Enum constant in enum class org.incenp.obofoundry.kgcl.model.EdgeType

A rdfs:subClassOf edge between two classes.

subject_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

subject_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

subject_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteEdgeContext

subject_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.MoveContext

subject_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewEdgeContext

subset_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.AddSubsetContext

subset_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSubsetContext

SubsetMembershipChange - Class in org.incenp.obofoundry.kgcl.model

A change in the membership status of a node with respect to a subset (view)

SubsetMembershipChange() - Constructor for class org.incenp.obofoundry.kgcl.model.SubsetMembershipChange

synonym - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewSynonymContext

synonym - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSynonymContext

SynonymPredicateChange - Class in org.incenp.obofoundry.kgcl.model

A node synonym change where the predicate of a synonym is changed.

SynonymPredicateChange() - Constructor for class org.incenp.obofoundry.kgcl.model.SynonymPredicateChange

SynonymReplacement - Class in org.incenp.obofoundry.kgcl.model

A node synonym change where the text of a synonym is changed

SynonymReplacement() - Constructor for class org.incenp.obofoundry.kgcl.model.SynonymReplacement

T

T__0 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__0 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__1 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__1 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__10 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__10 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__11 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__11 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__12 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__12 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__13 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__13 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__14 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__14 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__15 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__15 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__16 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__16 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__17 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__17 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__18 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__18 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__19 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__19 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__2 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__2 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__20 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__20 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__21 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__21 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__22 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__22 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__23 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__23 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__24 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__24 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__25 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__25 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__26 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__26 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__27 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__27 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__28 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__28 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__29 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__29 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__3 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__3 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__30 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__30 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__31 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__31 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__32 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__32 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__33 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__33 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__34 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__34 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__35 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__35 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__4 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__4 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__5 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__5 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__6 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__6 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__7 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__7 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__8 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__8 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__9 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__9 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

text() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

text() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeDefinitionContext

text() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeSynonymContext

text() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewDefinitionContext

text() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewNodeContext

text() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewSynonymContext

text() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSynonymContext

text() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RenameContext

text() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

text(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

text(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeDefinitionContext

text(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeSynonymContext

text(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RenameContext

TextContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.TextContext

TextDefinitionReplacement - Class in org.incenp.obofoundry.kgcl.model

A node change where a text definition is modified

TextDefinitionReplacement() - Constructor for class org.incenp.obofoundry.kgcl.model.TextDefinitionReplacement

TextualDiff - Class in org.incenp.obofoundry.kgcl.model

A summarizing of a change on a piece of text.

TextualDiff() - Constructor for class org.incenp.obofoundry.kgcl.model.TextualDiff

tokenNames - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

Deprecated.

Use KGCLLexer.VOCABULARY instead.

tokenNames - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

Deprecated.

Use KGCLParser.VOCABULARY instead.

toString() - Method in class org.incenp.obofoundry.kgcl.KGCLSyntaxError

toString() - Method in class org.incenp.obofoundry.kgcl.model.Activity

toString() - Method in class org.incenp.obofoundry.kgcl.model.AddNodeToSubset

toString() - Method in class org.incenp.obofoundry.kgcl.model.AddToSubset

toString() - Method in class org.incenp.obofoundry.kgcl.model.Agent

toString() - Method in class org.incenp.obofoundry.kgcl.model.AllowsAutomaticReplacementOfEdges

toString() - Method in class org.incenp.obofoundry.kgcl.model.Annotation

toString() - Method in class org.incenp.obofoundry.kgcl.model.Change

toString() - Method in class org.incenp.obofoundry.kgcl.model.ChangeLanguageElement

toString() - Method in class org.incenp.obofoundry.kgcl.model.ChangeMixin

toString() - Method in class org.incenp.obofoundry.kgcl.model.ChangeSetSummaryStatistic

toString() - Method in class org.incenp.obofoundry.kgcl.model.ClassCreation

toString() - Method in class org.incenp.obofoundry.kgcl.model.ClassNode

toString() - Method in class org.incenp.obofoundry.kgcl.model.ComplexChange

toString() - Method in class org.incenp.obofoundry.kgcl.model.Configuration

toString() - Method in class org.incenp.obofoundry.kgcl.model.Creation

toString() - Method in class org.incenp.obofoundry.kgcl.model.DatatypeChange

toString() - Method in class org.incenp.obofoundry.kgcl.model.DatatypeOrLanguageTagChange

toString() - Method in class org.incenp.obofoundry.kgcl.model.Deletion

toString() - Method in class org.incenp.obofoundry.kgcl.model.Edge

toString() - Method in class org.incenp.obofoundry.kgcl.model.EdgeChange

toString() - Method in class org.incenp.obofoundry.kgcl.model.EdgeCreation

toString() - Method in class org.incenp.obofoundry.kgcl.model.EdgeDeletion

toString() - Method in class org.incenp.obofoundry.kgcl.model.EdgeLogicalInterpretationChange

toString() - Method in class org.incenp.obofoundry.kgcl.model.EdgeObsoletion

toString() - Method in class org.incenp.obofoundry.kgcl.model.EdgeRewiring

toString() - Method in class org.incenp.obofoundry.kgcl.model.InstanceNode

toString() - Method in class org.incenp.obofoundry.kgcl.model.LanguageTagChange

toString() - Method in class org.incenp.obofoundry.kgcl.model.LogicalAxiomChange

toString() - Method in class org.incenp.obofoundry.kgcl.model.LogicalDefinition

toString() - Method in class org.incenp.obofoundry.kgcl.model.MappingCreation

toString() - Method in class org.incenp.obofoundry.kgcl.model.MappingPredicateChange

toString() - Method in class org.incenp.obofoundry.kgcl.model.MappingReplacement

toString() - Method in class org.incenp.obofoundry.kgcl.model.MetadataAssertionPredicateChange

toString() - Method in class org.incenp.obofoundry.kgcl.model.MetadataAssertionReplacement

toString() - Method in class org.incenp.obofoundry.kgcl.model.MultiNodeObsoletion

toString() - Method in class org.incenp.obofoundry.kgcl.model.NameBecomesSynonym

toString() - Method in class org.incenp.obofoundry.kgcl.model.NewMapping

toString() - Method in class org.incenp.obofoundry.kgcl.model.NewMetadataAssertion

toString() - Method in class org.incenp.obofoundry.kgcl.model.NewSynonym

toString() - Method in class org.incenp.obofoundry.kgcl.model.NewTextDefinition

toString() - Method in class org.incenp.obofoundry.kgcl.model.Node

toString() - Method in class org.incenp.obofoundry.kgcl.model.NodeAnnotationChange

toString() - Method in class org.incenp.obofoundry.kgcl.model.NodeAnnotationReplacement

toString() - Method in class org.incenp.obofoundry.kgcl.model.NodeChange

toString() - Method in class org.incenp.obofoundry.kgcl.model.NodeCreation

toString() - Method in class org.incenp.obofoundry.kgcl.model.NodeDeepening

toString() - Method in class org.incenp.obofoundry.kgcl.model.NodeDeletion

toString() - Method in class org.incenp.obofoundry.kgcl.model.NodeDirectMerge

toString() - Method in class org.incenp.obofoundry.kgcl.model.NodeMappingChange

toString() - Method in class org.incenp.obofoundry.kgcl.model.NodeMetadataAssertionChange

toString() - Method in class org.incenp.obofoundry.kgcl.model.NodeMove

toString() - Method in class org.incenp.obofoundry.kgcl.model.NodeObsoletion

toString() - Method in class org.incenp.obofoundry.kgcl.model.NodeObsoletionWithDirectReplacement

toString() - Method in class org.incenp.obofoundry.kgcl.model.NodeObsoletionWithNoDirectReplacement

toString() - Method in class org.incenp.obofoundry.kgcl.model.NodeRename

toString() - Method in class org.incenp.obofoundry.kgcl.model.NodeShallowing

toString() - Method in class org.incenp.obofoundry.kgcl.model.NodeSynonymChange

toString() - Method in class org.incenp.obofoundry.kgcl.model.NodeTextDefinitionChange

toString() - Method in class org.incenp.obofoundry.kgcl.model.NodeUnobsoletion

toString() - Method in class org.incenp.obofoundry.kgcl.model.ObjectPropertyCreation

toString() - Method in class org.incenp.obofoundry.kgcl.model.Obsoletion

toString() - Method in class org.incenp.obofoundry.kgcl.model.OntologyElement

toString() - Method in class org.incenp.obofoundry.kgcl.model.OntologySubset

toString() - Method in enum class org.incenp.obofoundry.kgcl.model.OwlType

toString() - Method in class org.incenp.obofoundry.kgcl.model.PlaceUnder

toString() - Method in class org.incenp.obofoundry.kgcl.model.PredicateChange

toString() - Method in class org.incenp.obofoundry.kgcl.model.PropertyValue

toString() - Method in class org.incenp.obofoundry.kgcl.model.ProvElement

toString() - Method in class org.incenp.obofoundry.kgcl.model.RemoveFromSubset

toString() - Method in class org.incenp.obofoundry.kgcl.model.RemoveMapping

toString() - Method in class org.incenp.obofoundry.kgcl.model.RemoveMetadataAssertion

toString() - Method in class org.incenp.obofoundry.kgcl.model.RemoveNodeFromSubset

toString() - Method in class org.incenp.obofoundry.kgcl.model.RemoveSynonym

toString() - Method in class org.incenp.obofoundry.kgcl.model.RemoveTextDefinition

toString() - Method in class org.incenp.obofoundry.kgcl.model.RemoveUnder

toString() - Method in class org.incenp.obofoundry.kgcl.model.Session

toString() - Method in class org.incenp.obofoundry.kgcl.model.SetLanguageForName

toString() - Method in class org.incenp.obofoundry.kgcl.model.SimpleChange

toString() - Method in class org.incenp.obofoundry.kgcl.model.SubsetMembershipChange

toString() - Method in class org.incenp.obofoundry.kgcl.model.SynonymPredicateChange

toString() - Method in class org.incenp.obofoundry.kgcl.model.SynonymReplacement

toString() - Method in class org.incenp.obofoundry.kgcl.model.TextDefinitionReplacement

toString() - Method in class org.incenp.obofoundry.kgcl.model.TextualDiff

toString() - Method in class org.incenp.obofoundry.kgcl.model.Transaction

toString() - Method in class org.incenp.obofoundry.kgcl.model.Unobsoletion

Transaction - Class in org.incenp.obofoundry.kgcl.model

A change that is a composition of a set of changes, where those changes are treated as a single unit.

Transaction() - Constructor for class org.incenp.obofoundry.kgcl.model.Transaction

type - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TextContext

typetag() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TextContext

typetag() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

TypetagContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.TypetagContext

U

unobsolete() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

unobsolete() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

UnobsoleteContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.UnobsoleteContext

Unobsoletion - Class in org.incenp.obofoundry.kgcl.model

Opposite operation of obsoletion.

Unobsoletion() - Constructor for class org.incenp.obofoundry.kgcl.model.Unobsoletion

upperBound - Variable in class org.incenp.obofoundry.kgcl.SequentialIDGenerator

V

valueOf(String) - Static method in enum class org.incenp.obofoundry.kgcl.model.EdgeType

Returns the enum constant of this class with the specified name.

valueOf(String) - Static method in enum class org.incenp.obofoundry.kgcl.model.OwlType

Returns the enum constant of this class with the specified name.

values() - Static method in enum class org.incenp.obofoundry.kgcl.model.EdgeType

Returns an array containing the constants of this enum class, in the order they are declared.

values() - Static method in enum class org.incenp.obofoundry.kgcl.model.OwlType

Returns an array containing the constants of this enum class, in the order they are declared.

visit(AddNodeToSubset) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(AddNodeToSubset) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(AddNodeToSubset) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(AddNodeToSubset) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(Change) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(Change) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(ClassCreation) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(ClassCreation) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(ClassCreation) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(ClassCreation) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(ComplexChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(ComplexChange) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(EdgeChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(EdgeChange) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(EdgeCreation) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

visit(EdgeCreation) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(EdgeCreation) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(EdgeCreation) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(EdgeCreation) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(EdgeCreation) - Method in class org.incenp.obofoundry.kgcl.owl.ProvisionalOWLTranslator

visit(EdgeDeletion) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

visit(EdgeDeletion) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(EdgeDeletion) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(EdgeDeletion) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(EdgeDeletion) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(EdgeLogicalInterpretationChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(EdgeLogicalInterpretationChange) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(EdgeObsoletion) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(EdgeObsoletion) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(EdgeRewiring) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(EdgeRewiring) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(LogicalAxiomChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(LogicalAxiomChange) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(MappingCreation) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(MappingCreation) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(MappingPredicateChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(MappingPredicateChange) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(MappingReplacement) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(MappingReplacement) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(MetadataAssertionPredicateChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(MetadataAssertionPredicateChange) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(MetadataAssertionReplacement) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(MetadataAssertionReplacement) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(MultiNodeObsoletion) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(MultiNodeObsoletion) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NameBecomesSynonym) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NameBecomesSynonym) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NewMapping) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NewMapping) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NewMetadataAssertion) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NewMetadataAssertion) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NewSynonym) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NewSynonym) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NewSynonym) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NewSynonym) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NewSynonym) - Method in class org.incenp.obofoundry.kgcl.owl.ProvisionalOWLTranslator

visit(NewTextDefinition) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NewTextDefinition) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NewTextDefinition) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NewTextDefinition) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeAnnotationChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeAnnotationChange) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeAnnotationChange) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NodeAnnotationChange) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeAnnotationReplacement) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeAnnotationReplacement) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NodeChange) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

visit(NodeChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeChange) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NodeCreation) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeCreation) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeCreation) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NodeCreation) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeDeepening) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

visit(NodeDeepening) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeDeepening) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeDeepening) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NodeDeepening) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeDeletion) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeDeletion) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeDeletion) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NodeDeletion) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeDirectMerge) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeDirectMerge) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NodeMappingChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeMappingChange) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NodeMetadataAssertionChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeMetadataAssertionChange) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NodeMove) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

visit(NodeMove) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeMove) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeMove) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NodeMove) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeObsoletion) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeObsoletion) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeObsoletion) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NodeObsoletion) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeObsoletion) - Method in class org.incenp.obofoundry.kgcl.owl.ProvisionalOWLTranslator

visit(NodeObsoletionWithDirectReplacement) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeObsoletionWithDirectReplacement) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeObsoletionWithDirectReplacement) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NodeObsoletionWithDirectReplacement) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeObsoletionWithDirectReplacement) - Method in class org.incenp.obofoundry.kgcl.owl.ProvisionalOWLTranslator

visit(NodeObsoletionWithNoDirectReplacement) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeObsoletionWithNoDirectReplacement) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeObsoletionWithNoDirectReplacement) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NodeObsoletionWithNoDirectReplacement) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeObsoletionWithNoDirectReplacement) - Method in class org.incenp.obofoundry.kgcl.owl.ProvisionalOWLTranslator

visit(NodeRename) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeRename) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeRename) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NodeRename) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeShallowing) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

visit(NodeShallowing) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeShallowing) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeShallowing) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NodeShallowing) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeSynonymChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeSynonymChange) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NodeTextDefinitionChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeTextDefinitionChange) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NodeUnobsoletion) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeUnobsoletion) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeUnobsoletion) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(NodeUnobsoletion) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(ObjectPropertyCreation) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(ObjectPropertyCreation) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(ObjectPropertyCreation) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(ObjectPropertyCreation) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(PlaceUnder) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

visit(PlaceUnder) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(PlaceUnder) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(PlaceUnder) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(PlaceUnder) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(PlaceUnder) - Method in class org.incenp.obofoundry.kgcl.owl.ProvisionalOWLTranslator

visit(PredicateChange) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

visit(PredicateChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(PredicateChange) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(PredicateChange) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(PredicateChange) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(RemoveMapping) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(RemoveMapping) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(RemoveMetadataAssertion) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(RemoveMetadataAssertion) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(RemoveNodeFromSubset) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(RemoveNodeFromSubset) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(RemoveNodeFromSubset) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(RemoveNodeFromSubset) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(RemoveSynonym) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(RemoveSynonym) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(RemoveSynonym) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(RemoveSynonym) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(RemoveTextDefinition) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(RemoveTextDefinition) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(RemoveTextDefinition) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(RemoveTextDefinition) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(RemoveUnder) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

visit(RemoveUnder) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(RemoveUnder) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(RemoveUnder) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(RemoveUnder) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(SetLanguageForName) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(SetLanguageForName) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(SimpleChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(SimpleChange) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(SynonymPredicateChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(SynonymPredicateChange) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(SynonymReplacement) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(SynonymReplacement) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(SynonymReplacement) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(SynonymReplacement) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(TextDefinitionReplacement) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(TextDefinitionReplacement) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(TextDefinitionReplacement) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(TextDefinitionReplacement) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(Transaction) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(Transaction) - Method in interface org.incenp.obofoundry.kgcl.model.IChangeVisitor

visit(OWLClass) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLDataAllValuesFrom) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLDataExactCardinality) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLDataHasValue) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLDataMaxCardinality) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLDataMinCardinality) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLDataSomeValuesFrom) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectAllValuesFrom) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectComplementOf) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectExactCardinality) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectHasSelf) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectHasValue) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectIntersectionOf) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectMaxCardinality) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectMinCardinality) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectOneOf) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectPropertyExpression) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectSomeValuesFrom) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectUnionOf) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visitAddSubset(KGCLParser.AddSubsetContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.addSubset().

visitAddSubset(KGCLParser.AddSubsetContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.addSubset().

visitAddSubset(KGCLParser.AddSubsetContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitChange(KGCLParser.ChangeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.change().

visitChange(KGCLParser.ChangeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.change().

visitChangeAnnotation(KGCLParser.ChangeAnnotationContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.changeAnnotation().

visitChangeAnnotation(KGCLParser.ChangeAnnotationContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.changeAnnotation().

visitChangeAnnotation(KGCLParser.ChangeAnnotationContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitChangeDefinition(KGCLParser.ChangeDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.changeDefinition().

visitChangeDefinition(KGCLParser.ChangeDefinitionContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.changeDefinition().

visitChangeDefinition(KGCLParser.ChangeDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitChangePredicate(KGCLParser.ChangePredicateContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.changePredicate().

visitChangePredicate(KGCLParser.ChangePredicateContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.changePredicate().

visitChangePredicate(KGCLParser.ChangePredicateContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitChangeset(KGCLParser.ChangesetContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.changeset().

visitChangeset(KGCLParser.ChangesetContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.changeset().

visitChangeSynonym(KGCLParser.ChangeSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.changeSynonym().

visitChangeSynonym(KGCLParser.ChangeSynonymContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.changeSynonym().

visitChangeSynonym(KGCLParser.ChangeSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitDelete(KGCLParser.DeleteContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.delete().

visitDelete(KGCLParser.DeleteContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.delete().

visitDelete(KGCLParser.DeleteContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitDeleteEdge(KGCLParser.DeleteEdgeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.deleteEdge().

visitDeleteEdge(KGCLParser.DeleteEdgeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.deleteEdge().

visitDeleteEdge(KGCLParser.DeleteEdgeContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitErrorNode(ErrorNode) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

visitIdAsCURIE(KGCLParser.IdAsCURIEContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by the IdAsCURIE labeled alternative in KGCLParser.id().

visitIdAsCURIE(KGCLParser.IdAsCURIEContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by the IdAsCURIE labeled alternative in KGCLParser.id().

visitIdAsCURIE(KGCLParser.IdAsCURIEContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitIdAsIRI(KGCLParser.IdAsIRIContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by the IdAsIRI labeled alternative in KGCLParser.id().

visitIdAsIRI(KGCLParser.IdAsIRIContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by the IdAsIRI labeled alternative in KGCLParser.id().

visitIdAsIRI(KGCLParser.IdAsIRIContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitIdAsLabel(KGCLParser.IdAsLabelContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by the IdAsLabel labeled alternative in KGCLParser.id().

visitIdAsLabel(KGCLParser.IdAsLabelContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by the IdAsLabel labeled alternative in KGCLParser.id().

visitIdAsLabel(KGCLParser.IdAsLabelContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitIdlist(KGCLParser.IdlistContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.idlist().

visitIdlist(KGCLParser.IdlistContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.idlist().

visitMove(KGCLParser.MoveContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.move().

visitMove(KGCLParser.MoveContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.move().

visitMove(KGCLParser.MoveContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitNewDefinition(KGCLParser.NewDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.newDefinition().

visitNewDefinition(KGCLParser.NewDefinitionContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.newDefinition().

visitNewDefinition(KGCLParser.NewDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitNewEdge(KGCLParser.NewEdgeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.newEdge().

visitNewEdge(KGCLParser.NewEdgeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.newEdge().

visitNewEdge(KGCLParser.NewEdgeContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitNewNode(KGCLParser.NewNodeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.newNode().

visitNewNode(KGCLParser.NewNodeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.newNode().

visitNewNode(KGCLParser.NewNodeContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitNewSynonym(KGCLParser.NewSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.newSynonym().

visitNewSynonym(KGCLParser.NewSynonymContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.newSynonym().

visitNewSynonym(KGCLParser.NewSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitNodeType(KGCLParser.NodeTypeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.nodeType().

visitNodeType(KGCLParser.NodeTypeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.nodeType().

visitObsoleteNoReplacement(KGCLParser.ObsoleteNoReplacementContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by the ObsoleteNoReplacement labeled alternative in KGCLParser.obsolete().

visitObsoleteNoReplacement(KGCLParser.ObsoleteNoReplacementContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by the ObsoleteNoReplacement labeled alternative in KGCLParser.obsolete().

visitObsoleteNoReplacement(KGCLParser.ObsoleteNoReplacementContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitObsoleteWithAlternative(KGCLParser.ObsoleteWithAlternativeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by the ObsoleteWithAlternative labeled alternative in KGCLParser.obsolete().

visitObsoleteWithAlternative(KGCLParser.ObsoleteWithAlternativeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by the ObsoleteWithAlternative labeled alternative in KGCLParser.obsolete().

visitObsoleteWithAlternative(KGCLParser.ObsoleteWithAlternativeContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitObsoleteWithReplacement(KGCLParser.ObsoleteWithReplacementContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by the ObsoleteWithReplacement labeled alternative in KGCLParser.obsolete().

visitObsoleteWithReplacement(KGCLParser.ObsoleteWithReplacementContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by the ObsoleteWithReplacement labeled alternative in KGCLParser.obsolete().

visitObsoleteWithReplacement(KGCLParser.ObsoleteWithReplacementContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitQualifier(KGCLParser.QualifierContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.qualifier().

visitQualifier(KGCLParser.QualifierContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.qualifier().

visitRemoveDefinition(KGCLParser.RemoveDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.removeDefinition().

visitRemoveDefinition(KGCLParser.RemoveDefinitionContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.removeDefinition().

visitRemoveDefinition(KGCLParser.RemoveDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitRemoveSubset(KGCLParser.RemoveSubsetContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.removeSubset().

visitRemoveSubset(KGCLParser.RemoveSubsetContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.removeSubset().

visitRemoveSubset(KGCLParser.RemoveSubsetContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitRemoveSynonym(KGCLParser.RemoveSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.removeSynonym().

visitRemoveSynonym(KGCLParser.RemoveSynonymContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.removeSynonym().

visitRemoveSynonym(KGCLParser.RemoveSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitRename(KGCLParser.RenameContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.rename().

visitRename(KGCLParser.RenameContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.rename().

visitRename(KGCLParser.RenameContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitString(KGCLParser.StringContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.string().

visitString(KGCLParser.StringContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.string().

visitTerminal(TerminalNode) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

visitText(KGCLParser.TextContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.text().

visitText(KGCLParser.TextContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.text().

visitTypetag(KGCLParser.TypetagContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.typetag().

visitTypetag(KGCLParser.TypetagContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.typetag().

visitUnobsolete(KGCLParser.UnobsoleteContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.unobsolete().

visitUnobsolete(KGCLParser.UnobsoleteContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.unobsolete().

visitUnobsolete(KGCLParser.UnobsoleteContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

VOCABULARY - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

VOCABULARY - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

W

write(String) - Method in class org.incenp.obofoundry.kgcl.KGCLWriter

Writes a comment line to the underlying sink.

write(List<Change>) - Method in class org.incenp.obofoundry.kgcl.KGCLWriter

Serialises and writes a KGCL changeset to the underlying sink.

write(Change) - Method in class org.incenp.obofoundry.kgcl.KGCLWriter

Serialise and writes a single KGCL change to the underlying sink.

WS - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

WS - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

_

_ATN - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

_ATN - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

_decisionToDFA - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

_decisionToDFA - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

_serializedATN - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

_serializedATN - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

_sharedContextCache - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

_sharedContextCache - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

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