A C D E F G H I K L M N O P Q R S T U V W _
All Classes All Packages

A

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.AddSubsetContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeDefinitionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangesetContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeSynonymContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteEdgeContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsCURIEContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsIRIContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsLabelContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdlistContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.MoveContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewDefinitionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewEdgeContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewNodeContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewSynonymContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NodeTypeContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteNoReplacementContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithAlternativeContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithReplacementContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.QualifierContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveDefinitionContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSubsetContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSynonymContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RenameContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.StringContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TextContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TypetagContext

accept(ParseTreeVisitor<? extends T>) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.UnobsoleteContext

add(String, String) - Method in interface org.incenp.obofoundry.kgcl.ILabelResolver

Registers a new label-to-identifier mapping.

add(String, String) - Method in class org.incenp.obofoundry.kgcl.SimpleLabelResolver

addErrorListener(IParseTreeErrorListener) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

Adds a listener for errors that may occur when processing the parse tree.

addRejectListener(RejectedChangeListener) - Method in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

Adds a listener for change rejection events.

addSubset() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

addSubset() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

AddSubsetContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.AddSubsetContext

alt_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithAlternativeContext

apply(List<Change>) - Method in interface org.incenp.obofoundry.kgcl.IPatcher

Applies a changeset to the knowledge graph.

apply(List<Change>, boolean) - Method in interface org.incenp.obofoundry.kgcl.IPatcher

Applies a changeset to the knowledge graph.

apply(List<Change>, boolean) - Method in class org.incenp.obofoundry.kgcl.owl.OntologyPatcher

apply(List<Change>, IPatcher, boolean, List<RejectedChange>) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Applies a KGCL changeset using the provided patcher object.

apply(List<Change>, OWLOntology, OWLReasoner, boolean) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Applies a KGCL changeset to an ontology.

apply(List<Change>, OWLOntology, OWLReasoner, boolean, List<RejectedChange>) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Applies a KGCL changeset to an ontology.

apply(List<Change>, OWLOntology, OWLReasoner, boolean, List<RejectedChange>, boolean) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Applies a KGCL changeset to an ontology.

apply(Change) - Method in interface org.incenp.obofoundry.kgcl.IPatcher

Applies a single change to the knowledge graph.

apply(Change) - Method in class org.incenp.obofoundry.kgcl.owl.OntologyPatcher

ApplyCommand - Class in org.incenp.obofoundry.kgcl.robot

A ROBOT command to apply KGCL-described changes to an ontology.

ApplyCommand() - Constructor for class org.incenp.obofoundry.kgcl.robot.ApplyCommand

AUTOID_BASE_IRI - Static variable in class org.incenp.obofoundry.kgcl.AutoIDAllocator

AutoIDAllocator - Class in org.incenp.obofoundry.kgcl

Helper object to assign automatically generated IDs to KGCL change objects.

AutoIDAllocator(IAutoIDGenerator) - Constructor for class org.incenp.obofoundry.kgcl.AutoIDAllocator

Creates a new instance.

C

change() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

change() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangesetContext

change(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangesetContext

changeAnnotation() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

changeAnnotation() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

ChangeAnnotationContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

ChangeContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

changeDefinition() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

changeDefinition() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

ChangeDefinitionContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeDefinitionContext

changePredicate() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

changePredicate() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

ChangePredicateContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

changeset() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

ChangesetContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangesetContext

changeSynonym() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

changeSynonym() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

ChangeSynonymContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeSynonymContext

ChangeVisitorBase<T> - Class in org.incenp.obofoundry.kgcl

Dummy implementation of IChangeVisitor.

ChangeVisitorBase() - Constructor for class org.incenp.obofoundry.kgcl.ChangeVisitorBase

channelNames - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

close() - Method in class org.incenp.obofoundry.kgcl.KGCLWriter

Closes the underlying writer.

COMMENT - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

COMMENT - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

convertTo(Map<String, Object>, Object, ConverterContext) - Method in class org.incenp.obofoundry.kgcl.SimpleChangeConverter

copyFrom(KGCLParser.IdContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdContext

copyFrom(KGCLParser.ObsoleteContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteContext

CURIE - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

CURIE - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

CURIE() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsCURIEContext

CURIE() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TypetagContext

D

datatype - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TypetagContext

delete() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

delete() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

DeleteContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteContext

deleteEdge() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

deleteEdge() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

DeleteEdgeContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteEdgeContext

DirectOWLTranslator - Class in org.incenp.obofoundry.kgcl.owl

A visitor to convert a list of KGCL Change objects into a list of OWL API OWLOntologyChange objects that, when applied to an ontology, would implement the requested changes.

DirectOWLTranslator(OWLOntology, OWLReasoner) - Constructor for class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

Creates a new instance for the specified ontology.

doDefault(Change) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

doDefault(Change) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

Override this method in derived classes to change the value returned by unimplemented methods.

doDefault(Change) - Method in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

DQ_STRING - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

DQ_STRING - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

DQ_STRING() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.StringContext

E

empty - Variable in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

enterAddSubset(KGCLParser.AddSubsetContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.addSubset().

enterAddSubset(KGCLParser.AddSubsetContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.addSubset().

enterChange(KGCLParser.ChangeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.change().

enterChange(KGCLParser.ChangeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.change().

enterChangeAnnotation(KGCLParser.ChangeAnnotationContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.changeAnnotation().

enterChangeAnnotation(KGCLParser.ChangeAnnotationContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.changeAnnotation().

enterChangeDefinition(KGCLParser.ChangeDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.changeDefinition().

enterChangeDefinition(KGCLParser.ChangeDefinitionContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.changeDefinition().

enterChangePredicate(KGCLParser.ChangePredicateContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.changePredicate().

enterChangePredicate(KGCLParser.ChangePredicateContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.changePredicate().

enterChangeset(KGCLParser.ChangesetContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.changeset().

enterChangeset(KGCLParser.ChangesetContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.changeset().

enterChangeSynonym(KGCLParser.ChangeSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.changeSynonym().

enterChangeSynonym(KGCLParser.ChangeSynonymContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.changeSynonym().

enterDelete(KGCLParser.DeleteContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.delete().

enterDelete(KGCLParser.DeleteContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.delete().

enterDeleteEdge(KGCLParser.DeleteEdgeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.deleteEdge().

enterDeleteEdge(KGCLParser.DeleteEdgeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.deleteEdge().

enterEveryRule(ParserRuleContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

enterIdAsCURIE(KGCLParser.IdAsCURIEContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by the IdAsCURIE labeled alternative in KGCLParser.id().

enterIdAsCURIE(KGCLParser.IdAsCURIEContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by the IdAsCURIE labeled alternative in KGCLParser.id().

enterIdAsIRI(KGCLParser.IdAsIRIContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by the IdAsIRI labeled alternative in KGCLParser.id().

enterIdAsIRI(KGCLParser.IdAsIRIContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by the IdAsIRI labeled alternative in KGCLParser.id().

enterIdAsLabel(KGCLParser.IdAsLabelContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by the IdAsLabel labeled alternative in KGCLParser.id().

enterIdAsLabel(KGCLParser.IdAsLabelContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by the IdAsLabel labeled alternative in KGCLParser.id().

enterIdlist(KGCLParser.IdlistContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.idlist().

enterIdlist(KGCLParser.IdlistContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.idlist().

enterMove(KGCLParser.MoveContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.move().

enterMove(KGCLParser.MoveContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.move().

enterNewDefinition(KGCLParser.NewDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.newDefinition().

enterNewDefinition(KGCLParser.NewDefinitionContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.newDefinition().

enterNewEdge(KGCLParser.NewEdgeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.newEdge().

enterNewEdge(KGCLParser.NewEdgeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.newEdge().

enterNewNode(KGCLParser.NewNodeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.newNode().

enterNewNode(KGCLParser.NewNodeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.newNode().

enterNewSynonym(KGCLParser.NewSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.newSynonym().

enterNewSynonym(KGCLParser.NewSynonymContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.newSynonym().

enterNodeType(KGCLParser.NodeTypeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.nodeType().

enterNodeType(KGCLParser.NodeTypeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.nodeType().

enterObsoleteNoReplacement(KGCLParser.ObsoleteNoReplacementContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by the ObsoleteNoReplacement labeled alternative in KGCLParser.obsolete().

enterObsoleteNoReplacement(KGCLParser.ObsoleteNoReplacementContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by the ObsoleteNoReplacement labeled alternative in KGCLParser.obsolete().

enterObsoleteWithAlternative(KGCLParser.ObsoleteWithAlternativeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by the ObsoleteWithAlternative labeled alternative in KGCLParser.obsolete().

enterObsoleteWithAlternative(KGCLParser.ObsoleteWithAlternativeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by the ObsoleteWithAlternative labeled alternative in KGCLParser.obsolete().

enterObsoleteWithReplacement(KGCLParser.ObsoleteWithReplacementContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by the ObsoleteWithReplacement labeled alternative in KGCLParser.obsolete().

enterObsoleteWithReplacement(KGCLParser.ObsoleteWithReplacementContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by the ObsoleteWithReplacement labeled alternative in KGCLParser.obsolete().

enterQualifier(KGCLParser.QualifierContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.qualifier().

enterQualifier(KGCLParser.QualifierContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.qualifier().

enterRemoveDefinition(KGCLParser.RemoveDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.removeDefinition().

enterRemoveDefinition(KGCLParser.RemoveDefinitionContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.removeDefinition().

enterRemoveSubset(KGCLParser.RemoveSubsetContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.removeSubset().

enterRemoveSubset(KGCLParser.RemoveSubsetContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.removeSubset().

enterRemoveSynonym(KGCLParser.RemoveSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.removeSynonym().

enterRemoveSynonym(KGCLParser.RemoveSynonymContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.removeSynonym().

enterRename(KGCLParser.RenameContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.rename().

enterRename(KGCLParser.RenameContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.rename().

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.AddSubsetContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeDefinitionContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangesetContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeSynonymContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteEdgeContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsCURIEContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsIRIContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsLabelContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdlistContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.MoveContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewDefinitionContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewEdgeContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewNodeContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewSynonymContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NodeTypeContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteNoReplacementContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithAlternativeContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithReplacementContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.QualifierContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveDefinitionContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSubsetContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSynonymContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RenameContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.StringContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TextContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TypetagContext

enterRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.UnobsoleteContext

enterString(KGCLParser.StringContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.string().

enterString(KGCLParser.StringContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.string().

enterText(KGCLParser.TextContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.text().

enterText(KGCLParser.TextContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.text().

enterTypetag(KGCLParser.TypetagContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.typetag().

enterTypetag(KGCLParser.TypetagContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.typetag().

enterUnobsolete(KGCLParser.UnobsoleteContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Enter a parse tree produced by KGCLParser.unobsolete().

enterUnobsolete(KGCLParser.UnobsoleteContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Enter a parse tree produced by KGCLParser.unobsolete().

EOF() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangesetContext

execute(CommandState, String[]) - Method in class org.incenp.obofoundry.kgcl.robot.ApplyCommand

execute(CommandState, String[]) - Method in class org.incenp.obofoundry.kgcl.robot.MintCommand

exitAddSubset(KGCLParser.AddSubsetContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.addSubset().

exitAddSubset(KGCLParser.AddSubsetContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.addSubset().

exitChange(KGCLParser.ChangeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.change().

exitChange(KGCLParser.ChangeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.change().

exitChangeAnnotation(KGCLParser.ChangeAnnotationContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.changeAnnotation().

exitChangeAnnotation(KGCLParser.ChangeAnnotationContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.changeAnnotation().

exitChangeDefinition(KGCLParser.ChangeDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.changeDefinition().

exitChangeDefinition(KGCLParser.ChangeDefinitionContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.changeDefinition().

exitChangePredicate(KGCLParser.ChangePredicateContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.changePredicate().

exitChangePredicate(KGCLParser.ChangePredicateContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.changePredicate().

exitChangeset(KGCLParser.ChangesetContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.changeset().

exitChangeset(KGCLParser.ChangesetContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.changeset().

exitChangeSynonym(KGCLParser.ChangeSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.changeSynonym().

exitChangeSynonym(KGCLParser.ChangeSynonymContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.changeSynonym().

exitDelete(KGCLParser.DeleteContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.delete().

exitDelete(KGCLParser.DeleteContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.delete().

exitDeleteEdge(KGCLParser.DeleteEdgeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.deleteEdge().

exitDeleteEdge(KGCLParser.DeleteEdgeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.deleteEdge().

exitEveryRule(ParserRuleContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

exitIdAsCURIE(KGCLParser.IdAsCURIEContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by the IdAsCURIE labeled alternative in KGCLParser.id().

exitIdAsCURIE(KGCLParser.IdAsCURIEContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by the IdAsCURIE labeled alternative in KGCLParser.id().

exitIdAsIRI(KGCLParser.IdAsIRIContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by the IdAsIRI labeled alternative in KGCLParser.id().

exitIdAsIRI(KGCLParser.IdAsIRIContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by the IdAsIRI labeled alternative in KGCLParser.id().

exitIdAsLabel(KGCLParser.IdAsLabelContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by the IdAsLabel labeled alternative in KGCLParser.id().

exitIdAsLabel(KGCLParser.IdAsLabelContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by the IdAsLabel labeled alternative in KGCLParser.id().

exitIdlist(KGCLParser.IdlistContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.idlist().

exitIdlist(KGCLParser.IdlistContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.idlist().

exitMove(KGCLParser.MoveContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.move().

exitMove(KGCLParser.MoveContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.move().

exitNewDefinition(KGCLParser.NewDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.newDefinition().

exitNewDefinition(KGCLParser.NewDefinitionContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.newDefinition().

exitNewEdge(KGCLParser.NewEdgeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.newEdge().

exitNewEdge(KGCLParser.NewEdgeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.newEdge().

exitNewNode(KGCLParser.NewNodeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.newNode().

exitNewNode(KGCLParser.NewNodeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.newNode().

exitNewSynonym(KGCLParser.NewSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.newSynonym().

exitNewSynonym(KGCLParser.NewSynonymContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.newSynonym().

exitNodeType(KGCLParser.NodeTypeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.nodeType().

exitNodeType(KGCLParser.NodeTypeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.nodeType().

exitObsoleteNoReplacement(KGCLParser.ObsoleteNoReplacementContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by the ObsoleteNoReplacement labeled alternative in KGCLParser.obsolete().

exitObsoleteNoReplacement(KGCLParser.ObsoleteNoReplacementContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by the ObsoleteNoReplacement labeled alternative in KGCLParser.obsolete().

exitObsoleteWithAlternative(KGCLParser.ObsoleteWithAlternativeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by the ObsoleteWithAlternative labeled alternative in KGCLParser.obsolete().

exitObsoleteWithAlternative(KGCLParser.ObsoleteWithAlternativeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by the ObsoleteWithAlternative labeled alternative in KGCLParser.obsolete().

exitObsoleteWithReplacement(KGCLParser.ObsoleteWithReplacementContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by the ObsoleteWithReplacement labeled alternative in KGCLParser.obsolete().

exitObsoleteWithReplacement(KGCLParser.ObsoleteWithReplacementContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by the ObsoleteWithReplacement labeled alternative in KGCLParser.obsolete().

exitQualifier(KGCLParser.QualifierContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.qualifier().

exitQualifier(KGCLParser.QualifierContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.qualifier().

exitRemoveDefinition(KGCLParser.RemoveDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.removeDefinition().

exitRemoveDefinition(KGCLParser.RemoveDefinitionContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.removeDefinition().

exitRemoveSubset(KGCLParser.RemoveSubsetContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.removeSubset().

exitRemoveSubset(KGCLParser.RemoveSubsetContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.removeSubset().

exitRemoveSynonym(KGCLParser.RemoveSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.removeSynonym().

exitRemoveSynonym(KGCLParser.RemoveSynonymContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.removeSynonym().

exitRename(KGCLParser.RenameContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.rename().

exitRename(KGCLParser.RenameContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.rename().

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.AddSubsetContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeDefinitionContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangesetContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeSynonymContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteEdgeContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsCURIEContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsIRIContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsLabelContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdlistContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.MoveContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewDefinitionContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewEdgeContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewNodeContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewSynonymContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NodeTypeContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteNoReplacementContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithAlternativeContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithReplacementContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.QualifierContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveDefinitionContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSubsetContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSynonymContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RenameContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.StringContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TextContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TypetagContext

exitRule(ParseTreeListener) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.UnobsoleteContext

exitString(KGCLParser.StringContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.string().

exitString(KGCLParser.StringContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.string().

exitText(KGCLParser.TextContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.text().

exitText(KGCLParser.TextContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.text().

exitTypetag(KGCLParser.TypetagContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.typetag().

exitTypetag(KGCLParser.TypetagContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.typetag().

exitUnobsolete(KGCLParser.UnobsoleteContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

Exit a parse tree produced by KGCLParser.unobsolete().

exitUnobsolete(KGCLParser.UnobsoleteContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLListener

Exit a parse tree produced by KGCLParser.unobsolete().

extractPendingChanges(OWLOntology, ZonedDateTime) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Gets the "pending" (provisional) changes that are stored as KGCL annotations in the ontology,

extractProvisionalChanges(boolean, ZonedDateTime) - Method in class org.incenp.obofoundry.kgcl.owl.ProvisionalOWLTranslator

Extracts the list of provisional changes stored as KGCL annotations within the ontology.

F

factory - Variable in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

factory - Variable in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

findEdges(IRI, IRI, IRI) - Method in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

Gets all axioms representing edges between a subject and an object.

findMatchingAnnotations(IRI, IRI, NodeChange) - Method in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

Finds all annotations with a literal value that matches the old value of a NodeChange object.

findMatchingAnnotations(IRI, IRI, NodeChange, boolean) - Method in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

Finds all annotations with a literal value that matches the old value of a NodeChange object.

G

getATN() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

getATN() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

getChange() - Method in class org.incenp.obofoundry.kgcl.RejectedChange

Gets the rejected change.

getChangeSet() - Method in class org.incenp.obofoundry.kgcl.KGCLReader

Gets the KGCL changeset that has been parsed from the underlying source.

getChannelNames() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

getDescription() - Method in class org.incenp.obofoundry.kgcl.robot.ApplyCommand

getDescription() - Method in class org.incenp.obofoundry.kgcl.robot.MintCommand

getErrors() - Method in class org.incenp.obofoundry.kgcl.KGCLReader

Gets all syntax errors that were found when parsing, if any.

getGrammarFileName() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

getGrammarFileName() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

getLine() - Method in class org.incenp.obofoundry.kgcl.KGCLSyntaxError

Gets the line where the error occurred.

getLiteral(NodeChange) - Method in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

Constructs a literal value from the new value parameters of a change object.

getLiteral(NodeChange, String) - Method in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

Constructs a literal value from the new value parameters of a change object.

getMessage() - Method in class org.incenp.obofoundry.kgcl.KGCLSyntaxError

Gets the error message.

getModeNames() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

getName() - Method in class org.incenp.obofoundry.kgcl.robot.ApplyCommand

getName() - Method in class org.incenp.obofoundry.kgcl.robot.MintCommand

getNewId(String) - Method in interface org.incenp.obofoundry.kgcl.ILabelResolver

Mints a new identifier for the given label.

getNewId(String) - Method in class org.incenp.obofoundry.kgcl.SimpleLabelResolver

getOptions() - Method in class org.incenp.obofoundry.kgcl.robot.ApplyCommand

getOptions() - Method in class org.incenp.obofoundry.kgcl.robot.MintCommand

getPosition() - Method in class org.incenp.obofoundry.kgcl.KGCLSyntaxError

Gets the position in the line where the error occurred.

getReason() - Method in class org.incenp.obofoundry.kgcl.RejectedChange

Gets the reason for rejection.

getRejectedChanges() - Method in interface org.incenp.obofoundry.kgcl.IPatcher

Gets the changes that have been rejected by this patcher.

getRejectedChanges() - Method in class org.incenp.obofoundry.kgcl.owl.OntologyPatcher

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.AddSubsetContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeDefinitionContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangesetContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeSynonymContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteEdgeContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdlistContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.MoveContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewDefinitionContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewEdgeContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewNodeContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewSynonymContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NodeTypeContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.QualifierContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveDefinitionContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSubsetContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSynonymContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RenameContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.StringContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TextContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TypetagContext

getRuleIndex() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.UnobsoleteContext

getRuleNames() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

getRuleNames() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

getSerializedATN() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

getSerializedATN() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

getTokenNames() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

Deprecated.

getTokenNames() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

Deprecated.

getUnallocatedIDs() - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

getUsage() - Method in class org.incenp.obofoundry.kgcl.robot.ApplyCommand

getUsage() - Method in class org.incenp.obofoundry.kgcl.robot.MintCommand

getVocabulary() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

getVocabulary() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

H

hasErrors() - Method in class org.incenp.obofoundry.kgcl.KGCLReader

Indicates whether parsing errors occurred.

hasRejectedChanges() - Method in interface org.incenp.obofoundry.kgcl.IPatcher

Indicates whether changes have been rejected by this patcher.

hasRejectedChanges() - Method in class org.incenp.obofoundry.kgcl.owl.OntologyPatcher

I

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.AddSubsetContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeDefinitionContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeSynonymContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteEdgeContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdlistContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.MoveContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewDefinitionContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewEdgeContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewNodeContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewSynonymContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteNoReplacementContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithAlternativeContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithReplacementContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveDefinitionContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSubsetContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSynonymContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RenameContext

id() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.UnobsoleteContext

id(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.AddSubsetContext

id(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

id(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

id(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteEdgeContext

id(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdlistContext

id(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.MoveContext

id(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewEdgeContext

id(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithReplacementContext

id(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSubsetContext

IdAsCURIEContext(KGCLParser.IdContext) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsCURIEContext

IdAsIRIContext(KGCLParser.IdContext) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsIRIContext

IdAsLabelContext(KGCLParser.IdContext) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsLabelContext

IdContext() - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdContext

IdContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdContext

idlist() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

idlist() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithAlternativeContext

IdlistContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdlistContext

ILabelResolver - Interface in org.incenp.obofoundry.kgcl

An object that can resolve labels into proper entity identifiers.

IParseTreeErrorListener - Interface in org.incenp.obofoundry.kgcl.parser

An object that listens to errors that may occur when processing the parse tree of a KGCL changeset.

IPatcher - Interface in org.incenp.obofoundry.kgcl

An object to apply KGCL-described changes to a knowledge graph.

IRI - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

IRI - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

IRI() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsIRIContext

K

KGCLBaseListener - Class in org.incenp.obofoundry.kgcl.parser

This class provides an empty implementation of KGCLListener, which can be extended to create a listener which only needs to handle a subset of the available methods.

KGCLBaseListener() - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

KGCLBaseVisitor<T> - Class in org.incenp.obofoundry.kgcl.parser

This class provides an empty implementation of KGCLVisitor, which can be extended to create a visitor which only needs to handle a subset of the available methods.

KGCLBaseVisitor() - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

KGCLHelper - Class in org.incenp.obofoundry.kgcl

A class providing static helper methods to work with KGCL.

KGCLHelper() - Constructor for class org.incenp.obofoundry.kgcl.KGCLHelper

KGCLLexer - Class in org.incenp.obofoundry.kgcl.parser

KGCLLexer(CharStream) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLLexer

KGCLListener - Interface in org.incenp.obofoundry.kgcl.parser

This interface defines a complete listener for a parse tree produced by KGCLParser.

KGCLParser - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser(TokenStream) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser

KGCLParser.AddSubsetContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.ChangeAnnotationContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.ChangeContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.ChangeDefinitionContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.ChangePredicateContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.ChangesetContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.ChangeSynonymContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.DeleteContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.DeleteEdgeContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.IdAsCURIEContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.IdAsIRIContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.IdAsLabelContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.IdContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.IdlistContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.MoveContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.NewDefinitionContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.NewEdgeContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.NewNodeContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.NewSynonymContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.NodeTypeContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.ObsoleteContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.ObsoleteNoReplacementContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.ObsoleteWithAlternativeContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.ObsoleteWithReplacementContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.QualifierContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.RemoveDefinitionContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.RemoveSubsetContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.RemoveSynonymContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.RenameContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.StringContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.TextContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.TypetagContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLParser.UnobsoleteContext - Class in org.incenp.obofoundry.kgcl.parser

KGCLReader - Class in org.incenp.obofoundry.kgcl

A parser to read a KGCL program from a file or a file-like source.

KGCLReader() - Constructor for class org.incenp.obofoundry.kgcl.KGCLReader

Creates a new instance without an input source.

KGCLReader(File) - Constructor for class org.incenp.obofoundry.kgcl.KGCLReader

Creates a new instance to read from a file.

KGCLReader(InputStream) - Constructor for class org.incenp.obofoundry.kgcl.KGCLReader

Creates a new instance to read from a stream.

KGCLReader(Reader) - Constructor for class org.incenp.obofoundry.kgcl.KGCLReader

Creates a new instance to read from a reader object.

KGCLReader(String) - Constructor for class org.incenp.obofoundry.kgcl.KGCLReader

Creates a new instance to read from a file.

KGCLSyntaxError - Class in org.incenp.obofoundry.kgcl

A syntax error encountered when parsing a KGCL program.

KGCLSyntaxError(int, int, String) - Constructor for class org.incenp.obofoundry.kgcl.KGCLSyntaxError

Creates a new instance.

KGCLTextTranslator - Class in org.incenp.obofoundry.kgcl

A visitor to convert a list of KGCL Change objects into their textual representation in the KGCL language.

KGCLTextTranslator() - Constructor for class org.incenp.obofoundry.kgcl.KGCLTextTranslator

Creates a new instance without a prefix manager.

KGCLTextTranslator(PrefixManager) - Constructor for class org.incenp.obofoundry.kgcl.KGCLTextTranslator

Creates a new instance with the specified prefix manager.

KGCLVisitor<T> - Interface in org.incenp.obofoundry.kgcl.parser

This interface defines a complete generic visitor for a parse tree produced by KGCLParser.

KGCLWriter - Class in org.incenp.obofoundry.kgcl

A writer to serialise KGCL change objects into a KGCL program that is written to a file or file-like sink.

KGCLWriter(File) - Constructor for class org.incenp.obofoundry.kgcl.KGCLWriter

Creates a new instance to write to a file.

KGCLWriter(OutputStream) - Constructor for class org.incenp.obofoundry.kgcl.KGCLWriter

Creates a new instance to write to a stream.

KGCLWriter(Writer) - Constructor for class org.incenp.obofoundry.kgcl.KGCLWriter

Creates a new instance to write to a character stream writer.

KGCLWriter(String) - Constructor for class org.incenp.obofoundry.kgcl.KGCLWriter

Creates a new instance to write to a file.

L

label - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewNodeContext

lang - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TextContext

LANGTAG - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

LANGTAG - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

LANGTAG() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TextContext

M

main(String[]) - Method in class org.incenp.obofoundry.kgcl.robot.ApplyCommand

main(String[]) - Method in class org.incenp.obofoundry.kgcl.robot.MintCommand

main(String[]) - Static method in class org.incenp.obofoundry.kgcl.robot.StandaloneRobot

MintCommand - Class in org.incenp.obofoundry.kgcl.robot

MintCommand() - Constructor for class org.incenp.obofoundry.kgcl.robot.MintCommand

modeNames - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

move() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

move() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

MoveContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.MoveContext

N

new_annotation - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

new_definition - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeDefinitionContext

new_definition - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewDefinitionContext

new_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithReplacementContext

new_label - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RenameContext

new_parent - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.MoveContext

new_predicate_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

new_synonym - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeSynonymContext

newDefinition() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

newDefinition() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

NewDefinitionContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewDefinitionContext

newEdge() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

newEdge() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

NewEdgeContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewEdgeContext

newNode() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

newNode() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

NewNodeContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewNodeContext

newSynonym() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

newSynonym() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

NewSynonymContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewSynonymContext

NL - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

NL - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

NL() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangesetContext

NL(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangesetContext

node_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.AddSubsetContext

node_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSubsetContext

nodeType() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewNodeContext

nodeType() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

NodeTypeContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.NodeTypeContext

O

object_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

object_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteEdgeContext

object_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewEdgeContext

obsolete() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

obsolete() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

ObsoleteContext() - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteContext

ObsoleteContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteContext

ObsoleteNoReplacementContext(KGCLParser.ObsoleteContext) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteNoReplacementContext

ObsoleteWithAlternativeContext(KGCLParser.ObsoleteContext) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithAlternativeContext

ObsoleteWithReplacementContext(KGCLParser.ObsoleteContext) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithReplacementContext

old_annotation - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

old_definition - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeDefinitionContext

old_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteNoReplacementContext

old_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithAlternativeContext

old_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ObsoleteWithReplacementContext

old_label - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RenameContext

old_parent - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.MoveContext

old_predicate_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

old_synonym - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeSynonymContext

onReject(Change, String, Object...) - Method in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

Called internally whenever a change is rejected.

ontology - Variable in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

OntologyBasedLabelResolver - Class in org.incenp.obofoundry.kgcl.owl

An object to resolve labels into identifiers using the rdfs:label annotations of an ontology’s entities.

OntologyBasedLabelResolver(OWLOntology) - Constructor for class org.incenp.obofoundry.kgcl.owl.OntologyBasedLabelResolver

Creates a new instance to resolve labels based on the contents of the provided ontology.

OntologyPatcher - Class in org.incenp.obofoundry.kgcl.owl

A class to apply KGCL-described changes to a OWL API ontology.

OntologyPatcher(OWLOntology, OWLReasoner) - Constructor for class org.incenp.obofoundry.kgcl.owl.OntologyPatcher

Creates a new instance to update the specified ontology.

org.incenp.obofoundry.kgcl - package org.incenp.obofoundry.kgcl

org.incenp.obofoundry.kgcl.owl - package org.incenp.obofoundry.kgcl.owl

org.incenp.obofoundry.kgcl.parser - package org.incenp.obofoundry.kgcl.parser

org.incenp.obofoundry.kgcl.robot - package org.incenp.obofoundry.kgcl.robot

OWLTranslator - Class in org.incenp.obofoundry.kgcl.owl

Base class to translate KGCL change objects into OWL axioms.

OWLTranslator(OWLOntology, OWLReasoner) - Constructor for class org.incenp.obofoundry.kgcl.owl.OWLTranslator

Creates a new instance for the specified ontology.

P

parse(File, Map<String, String>, List<KGCLSyntaxError>, ILabelResolver) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Parses KGCL from a file and collects syntax errors.

parse(File, PrefixManager) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Parses KGCL from a file.

parse(File, PrefixManager, List<KGCLSyntaxError>) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Parses KGCL from a file and collects syntax errors.

parse(File, PrefixManager, List<KGCLSyntaxError>, ILabelResolver) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Parses KGCL from a file and collects syntax errors.

parse(String, Map<String, String>, List<KGCLSyntaxError>, ILabelResolver) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Parses KGCL from a string and collects syntax errors.

parse(String, PrefixManager) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Parses KGCL from a string.

parse(String, PrefixManager, List<KGCLSyntaxError>) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Parses KGCL from a string and collects syntax errors.

parse(String, PrefixManager, List<KGCLSyntaxError>, ILabelResolver) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Parses KGCL from a string and collects syntax errors.

ParseTree2ChangeVisitor - Class in org.incenp.obofoundry.kgcl.parser

A visitor to converts the ANTLR parse tree of a KGCL changeset into a list of Change objects.

ParseTree2ChangeVisitor(PrefixManager, ILabelResolver, List<Change>) - Constructor for class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

Creates a new visitor with the specified prefix manager and list to store the changes.

parseTreeError(int, int, String) - Method in interface org.incenp.obofoundry.kgcl.parser.IParseTreeErrorListener

Called upon encountering a parse tree error.

parseYAML(File, Map<String, String>) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Parses a changeset serialised in YAML form.

parseYAML(File, PrefixManager) - Static method in class org.incenp.obofoundry.kgcl.KGCLHelper

Parses a changeset serialised in YAML form.

predicate_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

predicate_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteEdgeContext

predicate_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewEdgeContext

ProvisionalOWLTranslator - Class in org.incenp.obofoundry.kgcl.owl

ProvisionalOWLTranslator(OWLOntology, OWLReasoner) - Constructor for class org.incenp.obofoundry.kgcl.owl.ProvisionalOWLTranslator

Q

qualifier() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewSynonymContext

qualifier() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

QualifierContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.QualifierContext

R

read() - Method in class org.incenp.obofoundry.kgcl.KGCLReader

Parses the KGCL program from the underlying source.

read(String) - Method in class org.incenp.obofoundry.kgcl.KGCLReader

Parses the KGCL program from the specified string.

read(String, boolean) - Method in class org.incenp.obofoundry.kgcl.KGCLReader

Parses the KGCL program from the specified string.

reallocate(List<Change>) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

Assigns automatic IDs in the given list of change objects.

reasoner - Variable in class org.incenp.obofoundry.kgcl.owl.OWLTranslator

RecursiveClassExpressionVisitorBase - Class in org.incenp.obofoundry.kgcl.owl

A helper class to apply arbitrary transformations to class expressions.

RecursiveClassExpressionVisitorBase(OWLDataFactory) - Constructor for class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

rejected(Change, String) - Method in class org.incenp.obofoundry.kgcl.owl.OntologyPatcher

This method is called whenever a change is rejected.

rejected(Change, String) - Method in interface org.incenp.obofoundry.kgcl.RejectedChangeListener

This method is called when a change cannot be applied to an ontology.

RejectedChange - Class in org.incenp.obofoundry.kgcl

A change that could not be applied to the intended target graph.

RejectedChange(Change, String) - Constructor for class org.incenp.obofoundry.kgcl.RejectedChange

Creates a new instance.

RejectedChangeListener - Interface in org.incenp.obofoundry.kgcl

Listener for “rejected change” events – when OWLTranslator cannot translate a change for any reason.

removeDefinition() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

removeDefinition() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RemoveDefinitionContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveDefinitionContext

removeSubset() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

removeSubset() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RemoveSubsetContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSubsetContext

removeSynonym() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

removeSynonym() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RemoveSynonymContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSynonymContext

rename() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

rename() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RenameContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.RenameContext

resolve(String) - Method in interface org.incenp.obofoundry.kgcl.ILabelResolver

Finds the identifier corresponding to the given label.

resolve(String) - Method in class org.incenp.obofoundry.kgcl.owl.OntologyBasedLabelResolver

resolve(String) - Method in class org.incenp.obofoundry.kgcl.SimpleLabelResolver

RULE_addSubset - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_change - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_changeAnnotation - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_changeDefinition - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_changePredicate - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_changeset - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_changeSynonym - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_delete - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_deleteEdge - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_id - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_idlist - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_move - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_newDefinition - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_newEdge - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_newNode - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_newSynonym - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_nodeType - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_obsolete - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_qualifier - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_removeDefinition - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_removeSubset - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_removeSynonym - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_rename - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_string - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_text - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_typetag - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

RULE_unobsolete - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

ruleNames - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

ruleNames - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

S

serialise(Object, boolean, ConverterContext) - Method in class org.incenp.obofoundry.kgcl.SimpleChangeConverter

setLabelResolver(ILabelResolver) - Method in class org.incenp.obofoundry.kgcl.KGCLReader

Sets the label resolver.

setPrefixManager(OWLOntology) - Method in class org.incenp.obofoundry.kgcl.KGCLReader

Deprecated.

Using an ontology as the prefix manager is no longer recommended. Provide the reader with an explicit PrefixManager (with KGCLReader.setPrefixManager(PrefixManager)) instead.

setPrefixManager(OWLOntology) - Method in class org.incenp.obofoundry.kgcl.KGCLWriter

Deprecated.

Using an ontology as the prefix manager is no longer recommended. Provide the reader with an explicit PrefixManager (with KGCLWriter.setPrefixManager(PrefixManager)) instead.

setPrefixManager(PrefixManager) - Method in class org.incenp.obofoundry.kgcl.KGCLReader

Sets the prefix manager to use to expand short identifiers.

setPrefixManager(PrefixManager) - Method in class org.incenp.obofoundry.kgcl.KGCLWriter

Sets the prefix manager to use to compact identifiers.

setPrefixMap(Map<String, String>) - Method in class org.incenp.obofoundry.kgcl.KGCLReader

Sets the prefix map to use to resolve short identifiers.

setPrefixMap(Map<String, String>) - Method in class org.incenp.obofoundry.kgcl.KGCLWriter

Sets the prefix map to use to compact identifiers.

setProvisional(boolean) - Method in class org.incenp.obofoundry.kgcl.owl.OntologyPatcher

Sets this patcher object in "provisional" mode, where changes are recorded in the ontology rather applied.

SimpleChangeConverter - Class in org.incenp.obofoundry.kgcl

A custom LinkML converter for SimpleChange objects.

SimpleChangeConverter(Class<SimpleChange>) - Constructor for class org.incenp.obofoundry.kgcl.SimpleChangeConverter

SimpleLabelResolver - Class in org.incenp.obofoundry.kgcl

A basic implementation of the ILabelResolver interface.

SimpleLabelResolver() - Constructor for class org.incenp.obofoundry.kgcl.SimpleLabelResolver

SQ_STRING - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

SQ_STRING - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

SQ_STRING() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.StringContext

StandaloneRobot - Class in org.incenp.obofoundry.kgcl.robot

This class provides a version of the ROBOT tool that includes the KGCL 'apply' command.

StandaloneRobot() - Constructor for class org.incenp.obofoundry.kgcl.robot.StandaloneRobot

string() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.IdAsLabelContext

string() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

string() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TextContext

StringContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.StringContext

subject_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

subject_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangePredicateContext

subject_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.DeleteEdgeContext

subject_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.MoveContext

subject_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewEdgeContext

subset_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.AddSubsetContext

subset_id - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSubsetContext

synonym - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewSynonymContext

synonym - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSynonymContext

T

T__0 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__0 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__1 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__1 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__10 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__10 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__11 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__11 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__12 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__12 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__13 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__13 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__14 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__14 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__15 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__15 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__16 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__16 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__17 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__17 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__18 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__18 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__19 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__19 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__2 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__2 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__20 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__20 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__21 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__21 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__22 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__22 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__23 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__23 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__24 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__24 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__25 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__25 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__26 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__26 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__27 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__27 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__28 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__28 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__29 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__29 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__3 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__3 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__30 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__30 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__31 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__31 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__32 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__32 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__33 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__33 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__34 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__34 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__35 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__35 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__4 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__4 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__5 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__5 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__6 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__6 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__7 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__7 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__8 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__8 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

T__9 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

T__9 - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

text() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

text() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeDefinitionContext

text() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeSynonymContext

text() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewDefinitionContext

text() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewNodeContext

text() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.NewSynonymContext

text() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RemoveSynonymContext

text() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RenameContext

text() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

text(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeAnnotationContext

text(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeDefinitionContext

text(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeSynonymContext

text(int) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.RenameContext

TextContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.TextContext

tokenNames - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

Deprecated.

Use KGCLLexer.VOCABULARY instead.

tokenNames - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

Deprecated.

Use KGCLParser.VOCABULARY instead.

toString() - Method in class org.incenp.obofoundry.kgcl.KGCLSyntaxError

type - Variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TextContext

typetag() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.TextContext

typetag() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

TypetagContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.TypetagContext

U

unobsolete() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser.ChangeContext

unobsolete() - Method in class org.incenp.obofoundry.kgcl.parser.KGCLParser

UnobsoleteContext(ParserRuleContext, int) - Constructor for class org.incenp.obofoundry.kgcl.parser.KGCLParser.UnobsoleteContext

V

visit(AddNodeToSubset) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(AddNodeToSubset) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(AddNodeToSubset) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(Change) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(ClassCreation) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(ClassCreation) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(ClassCreation) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(ComplexChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(EdgeChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(EdgeCreation) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

visit(EdgeCreation) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(EdgeCreation) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(EdgeCreation) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(EdgeCreation) - Method in class org.incenp.obofoundry.kgcl.owl.ProvisionalOWLTranslator

visit(EdgeDeletion) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

visit(EdgeDeletion) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(EdgeDeletion) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(EdgeDeletion) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(EdgeLogicalInterpretationChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(EdgeObsoletion) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(EdgeRewiring) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(LogicalAxiomChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(MappingCreation) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(MappingPredicateChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(MappingReplacement) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(MetadataAssertionPredicateChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(MetadataAssertionReplacement) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(MultiNodeObsoletion) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NameBecomesSynonym) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NewMapping) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NewMetadataAssertion) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NewSynonym) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NewSynonym) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NewSynonym) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NewSynonym) - Method in class org.incenp.obofoundry.kgcl.owl.ProvisionalOWLTranslator

visit(NewTextDefinition) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NewTextDefinition) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NewTextDefinition) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeAnnotationChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeAnnotationChange) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeAnnotationChange) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeAnnotationReplacement) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeChange) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

visit(NodeChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeCreation) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeCreation) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeCreation) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeDeepening) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

visit(NodeDeepening) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeDeepening) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeDeepening) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeDeletion) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeDeletion) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeDeletion) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeDirectMerge) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeMappingChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeMetadataAssertionChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeMove) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

visit(NodeMove) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeMove) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeMove) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeObsoletion) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeObsoletion) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeObsoletion) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeObsoletion) - Method in class org.incenp.obofoundry.kgcl.owl.ProvisionalOWLTranslator

visit(NodeObsoletionWithDirectReplacement) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeObsoletionWithDirectReplacement) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeObsoletionWithDirectReplacement) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeObsoletionWithDirectReplacement) - Method in class org.incenp.obofoundry.kgcl.owl.ProvisionalOWLTranslator

visit(NodeObsoletionWithNoDirectReplacement) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeObsoletionWithNoDirectReplacement) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeObsoletionWithNoDirectReplacement) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeObsoletionWithNoDirectReplacement) - Method in class org.incenp.obofoundry.kgcl.owl.ProvisionalOWLTranslator

visit(NodeRename) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeRename) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeRename) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeShallowing) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

visit(NodeShallowing) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeShallowing) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeShallowing) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(NodeSynonymChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeTextDefinitionChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeUnobsoletion) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(NodeUnobsoletion) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(NodeUnobsoletion) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(ObjectPropertyCreation) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(ObjectPropertyCreation) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(ObjectPropertyCreation) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(PlaceUnder) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

visit(PlaceUnder) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(PlaceUnder) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(PlaceUnder) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(PlaceUnder) - Method in class org.incenp.obofoundry.kgcl.owl.ProvisionalOWLTranslator

visit(PredicateChange) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

visit(PredicateChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(PredicateChange) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(PredicateChange) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(RemoveMapping) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(RemoveMetadataAssertion) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(RemoveNodeFromSubset) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(RemoveNodeFromSubset) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(RemoveNodeFromSubset) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(RemoveSynonym) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(RemoveSynonym) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(RemoveSynonym) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(RemoveTextDefinition) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(RemoveTextDefinition) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(RemoveTextDefinition) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(RemoveUnder) - Method in class org.incenp.obofoundry.kgcl.AutoIDAllocator

visit(RemoveUnder) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(RemoveUnder) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(RemoveUnder) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(SetLanguageForName) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(SimpleChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(SynonymPredicateChange) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(SynonymReplacement) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(SynonymReplacement) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(SynonymReplacement) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(TextDefinitionReplacement) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(TextDefinitionReplacement) - Method in class org.incenp.obofoundry.kgcl.KGCLTextTranslator

visit(TextDefinitionReplacement) - Method in class org.incenp.obofoundry.kgcl.owl.DirectOWLTranslator

visit(Transaction) - Method in class org.incenp.obofoundry.kgcl.ChangeVisitorBase

visit(OWLClass) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLDataAllValuesFrom) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLDataExactCardinality) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLDataHasValue) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLDataMaxCardinality) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLDataMinCardinality) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLDataSomeValuesFrom) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectAllValuesFrom) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectComplementOf) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectExactCardinality) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectHasSelf) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectHasValue) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectIntersectionOf) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectMaxCardinality) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectMinCardinality) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectOneOf) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectPropertyExpression) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectSomeValuesFrom) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visit(OWLObjectUnionOf) - Method in class org.incenp.obofoundry.kgcl.owl.RecursiveClassExpressionVisitorBase

visitAddSubset(KGCLParser.AddSubsetContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.addSubset().

visitAddSubset(KGCLParser.AddSubsetContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.addSubset().

visitAddSubset(KGCLParser.AddSubsetContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitChange(KGCLParser.ChangeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.change().

visitChange(KGCLParser.ChangeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.change().

visitChangeAnnotation(KGCLParser.ChangeAnnotationContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.changeAnnotation().

visitChangeAnnotation(KGCLParser.ChangeAnnotationContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.changeAnnotation().

visitChangeAnnotation(KGCLParser.ChangeAnnotationContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitChangeDefinition(KGCLParser.ChangeDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.changeDefinition().

visitChangeDefinition(KGCLParser.ChangeDefinitionContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.changeDefinition().

visitChangeDefinition(KGCLParser.ChangeDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitChangePredicate(KGCLParser.ChangePredicateContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.changePredicate().

visitChangePredicate(KGCLParser.ChangePredicateContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.changePredicate().

visitChangePredicate(KGCLParser.ChangePredicateContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitChangeset(KGCLParser.ChangesetContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.changeset().

visitChangeset(KGCLParser.ChangesetContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.changeset().

visitChangeSynonym(KGCLParser.ChangeSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.changeSynonym().

visitChangeSynonym(KGCLParser.ChangeSynonymContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.changeSynonym().

visitChangeSynonym(KGCLParser.ChangeSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitDelete(KGCLParser.DeleteContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.delete().

visitDelete(KGCLParser.DeleteContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.delete().

visitDelete(KGCLParser.DeleteContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitDeleteEdge(KGCLParser.DeleteEdgeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.deleteEdge().

visitDeleteEdge(KGCLParser.DeleteEdgeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.deleteEdge().

visitDeleteEdge(KGCLParser.DeleteEdgeContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitErrorNode(ErrorNode) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

visitIdAsCURIE(KGCLParser.IdAsCURIEContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by the IdAsCURIE labeled alternative in KGCLParser.id().

visitIdAsCURIE(KGCLParser.IdAsCURIEContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by the IdAsCURIE labeled alternative in KGCLParser.id().

visitIdAsCURIE(KGCLParser.IdAsCURIEContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitIdAsIRI(KGCLParser.IdAsIRIContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by the IdAsIRI labeled alternative in KGCLParser.id().

visitIdAsIRI(KGCLParser.IdAsIRIContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by the IdAsIRI labeled alternative in KGCLParser.id().

visitIdAsIRI(KGCLParser.IdAsIRIContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitIdAsLabel(KGCLParser.IdAsLabelContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by the IdAsLabel labeled alternative in KGCLParser.id().

visitIdAsLabel(KGCLParser.IdAsLabelContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by the IdAsLabel labeled alternative in KGCLParser.id().

visitIdAsLabel(KGCLParser.IdAsLabelContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitIdlist(KGCLParser.IdlistContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.idlist().

visitIdlist(KGCLParser.IdlistContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.idlist().

visitMove(KGCLParser.MoveContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.move().

visitMove(KGCLParser.MoveContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.move().

visitMove(KGCLParser.MoveContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitNewDefinition(KGCLParser.NewDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.newDefinition().

visitNewDefinition(KGCLParser.NewDefinitionContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.newDefinition().

visitNewDefinition(KGCLParser.NewDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitNewEdge(KGCLParser.NewEdgeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.newEdge().

visitNewEdge(KGCLParser.NewEdgeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.newEdge().

visitNewEdge(KGCLParser.NewEdgeContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitNewNode(KGCLParser.NewNodeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.newNode().

visitNewNode(KGCLParser.NewNodeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.newNode().

visitNewNode(KGCLParser.NewNodeContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitNewSynonym(KGCLParser.NewSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.newSynonym().

visitNewSynonym(KGCLParser.NewSynonymContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.newSynonym().

visitNewSynonym(KGCLParser.NewSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitNodeType(KGCLParser.NodeTypeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.nodeType().

visitNodeType(KGCLParser.NodeTypeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.nodeType().

visitObsoleteNoReplacement(KGCLParser.ObsoleteNoReplacementContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by the ObsoleteNoReplacement labeled alternative in KGCLParser.obsolete().

visitObsoleteNoReplacement(KGCLParser.ObsoleteNoReplacementContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by the ObsoleteNoReplacement labeled alternative in KGCLParser.obsolete().

visitObsoleteNoReplacement(KGCLParser.ObsoleteNoReplacementContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitObsoleteWithAlternative(KGCLParser.ObsoleteWithAlternativeContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by the ObsoleteWithAlternative labeled alternative in KGCLParser.obsolete().

visitObsoleteWithAlternative(KGCLParser.ObsoleteWithAlternativeContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by the ObsoleteWithAlternative labeled alternative in KGCLParser.obsolete().

visitObsoleteWithAlternative(KGCLParser.ObsoleteWithAlternativeContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitObsoleteWithReplacement(KGCLParser.ObsoleteWithReplacementContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by the ObsoleteWithReplacement labeled alternative in KGCLParser.obsolete().

visitObsoleteWithReplacement(KGCLParser.ObsoleteWithReplacementContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by the ObsoleteWithReplacement labeled alternative in KGCLParser.obsolete().

visitObsoleteWithReplacement(KGCLParser.ObsoleteWithReplacementContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitQualifier(KGCLParser.QualifierContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.qualifier().

visitQualifier(KGCLParser.QualifierContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.qualifier().

visitRemoveDefinition(KGCLParser.RemoveDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.removeDefinition().

visitRemoveDefinition(KGCLParser.RemoveDefinitionContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.removeDefinition().

visitRemoveDefinition(KGCLParser.RemoveDefinitionContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitRemoveSubset(KGCLParser.RemoveSubsetContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.removeSubset().

visitRemoveSubset(KGCLParser.RemoveSubsetContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.removeSubset().

visitRemoveSubset(KGCLParser.RemoveSubsetContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitRemoveSynonym(KGCLParser.RemoveSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.removeSynonym().

visitRemoveSynonym(KGCLParser.RemoveSynonymContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.removeSynonym().

visitRemoveSynonym(KGCLParser.RemoveSynonymContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitRename(KGCLParser.RenameContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.rename().

visitRename(KGCLParser.RenameContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.rename().

visitRename(KGCLParser.RenameContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

visitString(KGCLParser.StringContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.string().

visitString(KGCLParser.StringContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.string().

visitTerminal(TerminalNode) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseListener

visitText(KGCLParser.TextContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.text().

visitText(KGCLParser.TextContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.text().

visitTypetag(KGCLParser.TypetagContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.typetag().

visitTypetag(KGCLParser.TypetagContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.typetag().

visitUnobsolete(KGCLParser.UnobsoleteContext) - Method in class org.incenp.obofoundry.kgcl.parser.KGCLBaseVisitor

Visit a parse tree produced by KGCLParser.unobsolete().

visitUnobsolete(KGCLParser.UnobsoleteContext) - Method in interface org.incenp.obofoundry.kgcl.parser.KGCLVisitor

Visit a parse tree produced by KGCLParser.unobsolete().

visitUnobsolete(KGCLParser.UnobsoleteContext) - Method in class org.incenp.obofoundry.kgcl.parser.ParseTree2ChangeVisitor

VOCABULARY - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

VOCABULARY - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

W

write(String) - Method in class org.incenp.obofoundry.kgcl.KGCLWriter

Writes a comment line to the underlying sink.

write(List<Change>) - Method in class org.incenp.obofoundry.kgcl.KGCLWriter

Serialises and writes a KGCL changeset to the underlying sink.

write(Change) - Method in class org.incenp.obofoundry.kgcl.KGCLWriter

Serialise and writes a single KGCL change to the underlying sink.

WS - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

WS - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

_

_ATN - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

_ATN - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

_decisionToDFA - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

_decisionToDFA - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

_serializedATN - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

_serializedATN - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

_sharedContextCache - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLLexer

_sharedContextCache - Static variable in class org.incenp.obofoundry.kgcl.parser.KGCLParser

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