Class Mapping

java.lang.Object
org.incenp.obofoundry.sssom.model.Mapping
public class Mapping extends Object
Represents a mapping object.

Automatically generated from the SSSOM LinkML schema.

  • Constructor Details

  • Method Details

    • getRecordId

      public String getRecordId()
      Gets the value of the record_id slot.

    • setRecordId

      public void setRecordId(String value)
      Sets the value of the record_id slot.

    • getSubjectId

      public String getSubjectId()
      Gets the value of the subject_id slot.

    • setSubjectId

      public void setSubjectId(String value)
      Sets the value of the subject_id slot.

    • getSubjectLabel

      public String getSubjectLabel()
      Gets the value of the subject_label slot.

    • setSubjectLabel

      public void setSubjectLabel(String value)
      Sets the value of the subject_label slot.

    • getSubjectCategory

      public String getSubjectCategory()
      Gets the value of the subject_category slot.

    • setSubjectCategory

      public void setSubjectCategory(String value)
      Sets the value of the subject_category slot.

    • getPredicateId

      public String getPredicateId()
      Gets the value of the predicate_id slot.

    • setPredicateId

      public void setPredicateId(String value)
      Sets the value of the predicate_id slot.

    • getPredicateLabel

      public String getPredicateLabel()
      Gets the value of the predicate_label slot.

    • setPredicateLabel

      public void setPredicateLabel(String value)
      Sets the value of the predicate_label slot.

    • getPredicateModifier

      public PredicateModifier getPredicateModifier()
      Gets the value of the predicate_modifier slot.

    • setPredicateModifier

      public void setPredicateModifier(PredicateModifier value)
      Sets the value of the predicate_modifier slot.

    • getObjectId

      public String getObjectId()
      Gets the value of the object_id slot.

    • setObjectId

      public void setObjectId(String value)
      Sets the value of the object_id slot.

    • getObjectLabel

      public String getObjectLabel()
      Gets the value of the object_label slot.

    • setObjectLabel

      public void setObjectLabel(String value)
      Sets the value of the object_label slot.

    • getObjectCategory

      public String getObjectCategory()
      Gets the value of the object_category slot.

    • setObjectCategory

      public void setObjectCategory(String value)
      Sets the value of the object_category slot.

    • getMappingJustification

      public String getMappingJustification()
      Gets the value of the mapping_justification slot.

    • setMappingJustification

      public void setMappingJustification(String value)
      Sets the value of the mapping_justification slot.

    • getAuthorId

      public List<String> getAuthorId()
      Gets the value of the author_id slot.

    • getAuthorId

      public List<String> getAuthorId(boolean set)
      Gets the list of author_id values, optionally initializing the list if needed.
      Parameters:
      set - If true, the underlying field will be initialized to an empty list if it happens to be null.
      Returns:
      The list of author_id values.

    • setAuthorId

      public void setAuthorId(List<String> value)
      Sets the value of the author_id slot.

    • getAuthorLabel

      public List<String> getAuthorLabel()
      Gets the value of the author_label slot.

    • getAuthorLabel

      public List<String> getAuthorLabel(boolean set)
      Gets the list of author_label values, optionally initializing the list if needed.
      Parameters:
      set - If true, the underlying field will be initialized to an empty list if it happens to be null.
      Returns:
      The list of author_label values.

    • setAuthorLabel

      public void setAuthorLabel(List<String> value)
      Sets the value of the author_label slot.

    • getReviewerId

      public List<String> getReviewerId()
      Gets the value of the reviewer_id slot.

    • getReviewerId

      public List<String> getReviewerId(boolean set)
      Gets the list of reviewer_id values, optionally initializing the list if needed.
      Parameters:
      set - If true, the underlying field will be initialized to an empty list if it happens to be null.
      Returns:
      The list of reviewer_id values.

    • setReviewerId

      public void setReviewerId(List<String> value)
      Sets the value of the reviewer_id slot.

    • getReviewerLabel

      public List<String> getReviewerLabel()
      Gets the value of the reviewer_label slot.

    • getReviewerLabel

      public List<String> getReviewerLabel(boolean set)
      Gets the list of reviewer_label values, optionally initializing the list if needed.
      Parameters:
      set - If true, the underlying field will be initialized to an empty list if it happens to be null.
      Returns:
      The list of reviewer_label values.

    • setReviewerLabel

      public void setReviewerLabel(List<String> value)
      Sets the value of the reviewer_label slot.

    • getCreatorId

      public List<String> getCreatorId()
      Gets the value of the creator_id slot.

    • getCreatorId

      public List<String> getCreatorId(boolean set)
      Gets the list of creator_id values, optionally initializing the list if needed.
      Parameters:
      set - If true, the underlying field will be initialized to an empty list if it happens to be null.
      Returns:
      The list of creator_id values.

    • setCreatorId

      public void setCreatorId(List<String> value)
      Sets the value of the creator_id slot.

    • getCreatorLabel

      public List<String> getCreatorLabel()
      Gets the value of the creator_label slot.

    • getCreatorLabel

      public List<String> getCreatorLabel(boolean set)
      Gets the list of creator_label values, optionally initializing the list if needed.
      Parameters:
      set - If true, the underlying field will be initialized to an empty list if it happens to be null.
      Returns:
      The list of creator_label values.

    • setCreatorLabel

      public void setCreatorLabel(List<String> value)
      Sets the value of the creator_label slot.

    • getLicense

      public String getLicense()
      Gets the value of the license slot.

    • setLicense

      public void setLicense(String value)
      Sets the value of the license slot.

    • getSubjectType

      public EntityType getSubjectType()
      Gets the value of the subject_type slot.

    • setSubjectType

      public void setSubjectType(EntityType value)
      Sets the value of the subject_type slot.

    • getSubjectSource

      public String getSubjectSource()
      Gets the value of the subject_source slot.

    • setSubjectSource

      public void setSubjectSource(String value)
      Sets the value of the subject_source slot.

    • getSubjectSourceVersion

      public String getSubjectSourceVersion()
      Gets the value of the subject_source_version slot.

    • setSubjectSourceVersion

      public void setSubjectSourceVersion(String value)
      Sets the value of the subject_source_version slot.

    • getObjectType

      public EntityType getObjectType()
      Gets the value of the object_type slot.

    • setObjectType

      public void setObjectType(EntityType value)
      Sets the value of the object_type slot.

    • getObjectSource

      public String getObjectSource()
      Gets the value of the object_source slot.

    • setObjectSource

      public void setObjectSource(String value)
      Sets the value of the object_source slot.

    • getObjectSourceVersion

      public String getObjectSourceVersion()
      Gets the value of the object_source_version slot.

    • setObjectSourceVersion

      public void setObjectSourceVersion(String value)
      Sets the value of the object_source_version slot.

    • getPredicateType

      public EntityType getPredicateType()
      Gets the value of the predicate_type slot.

    • setPredicateType

      public void setPredicateType(EntityType value)
      Sets the value of the predicate_type slot.

    • getMappingProvider

      public String getMappingProvider()
      Gets the value of the mapping_provider slot.

    • setMappingProvider

      public void setMappingProvider(String value)
      Sets the value of the mapping_provider slot.

    • getMappingSource

      public String getMappingSource()
      Gets the value of the mapping_source slot.

    • setMappingSource

      public void setMappingSource(String value)
      Sets the value of the mapping_source slot.

    • getMappingCardinality

      public MappingCardinality getMappingCardinality()
      Gets the value of the mapping_cardinality slot.

    • setMappingCardinality

      public void setMappingCardinality(MappingCardinality value)
      Sets the value of the mapping_cardinality slot.

    • getCardinalityScope

      public List<String> getCardinalityScope()
      Gets the value of the cardinality_scope slot.

    • getCardinalityScope

      public List<String> getCardinalityScope(boolean set)
      Gets the list of cardinality_scope values, optionally initializing the list if needed.
      Parameters:
      set - If true, the underlying field will be initialized to an empty list if it happens to be null.
      Returns:
      The list of cardinality_scope values.

    • setCardinalityScope

      public void setCardinalityScope(List<String> value)
      Sets the value of the cardinality_scope slot.

    • getMappingTool

      public String getMappingTool()
      Gets the value of the mapping_tool slot.

    • setMappingTool

      public void setMappingTool(String value)
      Sets the value of the mapping_tool slot.

    • getMappingToolId

      public String getMappingToolId()
      Gets the value of the mapping_tool_id slot.

    • setMappingToolId

      public void setMappingToolId(String value)
      Sets the value of the mapping_tool_id slot.

    • getMappingToolVersion

      public String getMappingToolVersion()
      Gets the value of the mapping_tool_version slot.

    • setMappingToolVersion

      public void setMappingToolVersion(String value)
      Sets the value of the mapping_tool_version slot.

    • getMappingDate

      public LocalDate getMappingDate()
      Gets the value of the mapping_date slot.

    • setMappingDate

      public void setMappingDate(LocalDate value)
      Sets the value of the mapping_date slot.

    • getPublicationDate

      public LocalDate getPublicationDate()
      Gets the value of the publication_date slot.

    • setPublicationDate

      public void setPublicationDate(LocalDate value)
      Sets the value of the publication_date slot.

    • getReviewDate

      public LocalDate getReviewDate()
      Gets the value of the review_date slot.

    • setReviewDate

      public void setReviewDate(LocalDate value)
      Sets the value of the review_date slot.

    • getConfidence

      public Double getConfidence()
      Gets the value of the confidence slot.

    • setConfidence

      public void setConfidence(Double value)
      Sets the value of the confidence slot.

    • getReviewerAgreement

      public Double getReviewerAgreement()
      Gets the value of the reviewer_agreement slot.

    • setReviewerAgreement

      public void setReviewerAgreement(Double value)
      Sets the value of the reviewer_agreement slot.

    • getCurationRule

      public List<String> getCurationRule()
      Gets the value of the curation_rule slot.

    • getCurationRule

      public List<String> getCurationRule(boolean set)
      Gets the list of curation_rule values, optionally initializing the list if needed.
      Parameters:
      set - If true, the underlying field will be initialized to an empty list if it happens to be null.
      Returns:
      The list of curation_rule values.

    • setCurationRule

      public void setCurationRule(List<String> value)
      Sets the value of the curation_rule slot.

    • getCurationRuleText

      public List<String> getCurationRuleText()
      Gets the value of the curation_rule_text slot.

    • getCurationRuleText

      public List<String> getCurationRuleText(boolean set)
      Gets the list of curation_rule_text values, optionally initializing the list if needed.
      Parameters:
      set - If true, the underlying field will be initialized to an empty list if it happens to be null.
      Returns:
      The list of curation_rule_text values.

    • setCurationRuleText

      public void setCurationRuleText(List<String> value)
      Sets the value of the curation_rule_text slot.

    • getSubjectMatchField

      public List<String> getSubjectMatchField()
      Gets the value of the subject_match_field slot.

    • getSubjectMatchField

      public List<String> getSubjectMatchField(boolean set)
      Gets the list of subject_match_field values, optionally initializing the list if needed.
      Parameters:
      set - If true, the underlying field will be initialized to an empty list if it happens to be null.
      Returns:
      The list of subject_match_field values.

    • setSubjectMatchField

      public void setSubjectMatchField(List<String> value)
      Sets the value of the subject_match_field slot.

    • getObjectMatchField

      public List<String> getObjectMatchField()
      Gets the value of the object_match_field slot.

    • getObjectMatchField

      public List<String> getObjectMatchField(boolean set)
      Gets the list of object_match_field values, optionally initializing the list if needed.
      Parameters:
      set - If true, the underlying field will be initialized to an empty list if it happens to be null.
      Returns:
      The list of object_match_field values.

    • setObjectMatchField

      public void setObjectMatchField(List<String> value)
      Sets the value of the object_match_field slot.

    • getMatchString

      public List<String> getMatchString()
      Gets the value of the match_string slot.

    • getMatchString

      public List<String> getMatchString(boolean set)
      Gets the list of match_string values, optionally initializing the list if needed.
      Parameters:
      set - If true, the underlying field will be initialized to an empty list if it happens to be null.
      Returns:
      The list of match_string values.

    • setMatchString

      public void setMatchString(List<String> value)
      Sets the value of the match_string slot.

    • getSubjectPreprocessing

      public List<String> getSubjectPreprocessing()
      Gets the value of the subject_preprocessing slot.

    • getSubjectPreprocessing

      public List<String> getSubjectPreprocessing(boolean set)
      Gets the list of subject_preprocessing values, optionally initializing the list if needed.
      Parameters:
      set - If true, the underlying field will be initialized to an empty list if it happens to be null.
      Returns:
      The list of subject_preprocessing values.

    • setSubjectPreprocessing

      public void setSubjectPreprocessing(List<String> value)
      Sets the value of the subject_preprocessing slot.

    • getObjectPreprocessing

      public List<String> getObjectPreprocessing()
      Gets the value of the object_preprocessing slot.

    • getObjectPreprocessing

      public List<String> getObjectPreprocessing(boolean set)
      Gets the list of object_preprocessing values, optionally initializing the list if needed.
      Parameters:
      set - If true, the underlying field will be initialized to an empty list if it happens to be null.
      Returns:
      The list of object_preprocessing values.

    • setObjectPreprocessing

      public void setObjectPreprocessing(List<String> value)
      Sets the value of the object_preprocessing slot.

    • getSimilarityScore

      public Double getSimilarityScore()
      Gets the value of the similarity_score slot.

    • setSimilarityScore

      public void setSimilarityScore(Double value)
      Sets the value of the similarity_score slot.

    • getSimilarityMeasure

      public String getSimilarityMeasure()
      Gets the value of the similarity_measure slot.

    • setSimilarityMeasure

      public void setSimilarityMeasure(String value)
      Sets the value of the similarity_measure slot.

    • getSeeAlso

      public List<String> getSeeAlso()
      Gets the value of the see_also slot.

    • getSeeAlso

      public List<String> getSeeAlso(boolean set)
      Gets the list of see_also values, optionally initializing the list if needed.
      Parameters:
      set - If true, the underlying field will be initialized to an empty list if it happens to be null.
      Returns:
      The list of see_also values.

    • setSeeAlso

      public void setSeeAlso(List<String> value)
      Sets the value of the see_also slot.

    • getIssueTrackerItem

      public String getIssueTrackerItem()
      Gets the value of the issue_tracker_item slot.

    • setIssueTrackerItem

      public void setIssueTrackerItem(String value)
      Sets the value of the issue_tracker_item slot.

    • getOther

      public String getOther()
      Gets the value of the other slot.

    • setOther

      public void setOther(String value)
      Sets the value of the other slot.

    • getComment

      public String getComment()
      Gets the value of the comment slot.

    • setComment

      public void setComment(String value)
      Sets the value of the comment slot.

    • getExtensions

      public Map<String, ExtensionValue> getExtensions()
      Gets the map of extension values.

    • getExtensions

      public Map<String, ExtensionValue> getExtensions(boolean set)
      Gets the map of extension values, optionally initializing the map if needed.
      Parameters:
      set - If true, the underlying field will be initialized to an empty map if it happens to be null.
      Returns:
      The map of extension values.

    • setExtensions

      public void setExtensions(Map<String, ExtensionValue> value)
      Sets the map of extension values.

    • isUnmapped

      public boolean isUnmapped()
      Indicates whether this mapping represents a "missing" mapping.

      A missing mapping is a mapping where the subject_id or the object_id (or both) is the special value sssom:NoTermFound, and indicates that an entity in one domain could not be mapped to any entity in another domain.

      Returns:
      True if the mapping is a missing mapping, false otherwise.

    • hasUnmappedSubject

      public boolean hasUnmappedSubject()
      Indicates whether the object of this mapping is not mapped to any entity on the subject side.
      Returns:
      True if the subject of this mapping is sssom:NoTermFound, false otherwise.

    • hasUnmappedObject

      public boolean hasUnmappedObject()
      Indicates whether the subject of this mapping is not mapped to any entity on the object side.
      Returns:
      True if the object of this mapping is sssom:NoTermFound, false otherwise.

    • isLiteral

      public boolean isLiteral()
      Indicates whether this mapping represents a "literal" mapping.

      A literal mapping is a mapping where either the subject or the object (or both) is a literal, as indicated by the subject_type or object_type slot being set to EntityType.RDFS_LITERAL.

      Returns:
      True if the mapping is a literal mapping, false otherwise.

    • invert

      public Mapping invert(String predicate)
      Creates an inverted version of this mapping with an explicit predicate.
      Parameters:
      predicate - The predicate to use for the new mapping.
      Returns:
      A new mapping that is the inverse of this one, or null if the specified predicate is itself null.

    • invert

      public Mapping invert()
      Creates an inverted version of this mapping if possible.

      Inversion is possible if the predicate is one of the known "common" predicates and is invertible. To invert a mapping with an arbitrary predicate, use invert(String).

      Returns:
      A new mapping that is the inverse of this one, or null if inversion is not possible.

    • toSExpr

      public String toSExpr()
      Creates a canonical S-expression representing this mapping.
      Returns:
      A String uniquely representing this mapping, as a canonical S-expression.

    • getSemanticSimilarityScore

      @Deprecated public Double getSemanticSimilarityScore()
      Deprecated.
      Use #getSimilarityScore() instead.

    • setSemanticSimilarityScore

      @Deprecated public void setSemanticSimilarityScore(Double value)
      Deprecated.
      Use #setSimilarityScore(Double) instead.

    • getSemanticSimilarityMeasure

      @Deprecated public String getSemanticSimilarityMeasure()
      Deprecated.
      Use #getSimilarityMeasure() instead.

    • setSemanticSimilarityMeasure

      @Deprecated public void setSemanticSimilarityMeasure(String value)
      Deprecated.
      Use #setSimilarityMeasure(String) instead.

    • toString

      public String toString()
      Overrides:
      toString in class Object

    • equals

      public boolean equals(Object o)
      Overrides:
      equals in class Object

    • canEqual

      protected boolean canEqual(Object other)

    • hashCode

      public int hashCode()
      Overrides:
      hashCode in class Object

    • builder

      public static Mapping.MappingBuilder builder()

    • toBuilder

      public Mapping.MappingBuilder toBuilder()