Package org.incenp.obofoundry.sssom.owl

Class SSSOMTHelper

java.lang.Object
org.incenp.obofoundry.sssom.owl.SSSOMTHelper
public class SSSOMTHelper extends Object
A helper class intended to host some methods used throughout the SSSOM/T-OWL code.

  • Field Details

    • ANNOTS_KEYWORD

      public static final String ANNOTS_KEYWORD
      The name of the parameter used to specify the annotations to generate on a mapping-derived axiom.
      See Also:

    • ANNOTS_URIS_KEYWORD

      public static final String ANNOTS_URIS_KEYWORD
      The name of the parameter used to specify how SSSOM fields are translated to OWL annotation property IRIs.
      See Also:

  • Constructor Details

    • SSSOMTHelper

      public SSSOMTHelper()

  • Method Details

    • maybeCreateAnnotatedTransformer

      public static IMappingTransformer<org.semanticweb.owlapi.model.OWLAxiom> maybeCreateAnnotatedTransformer(SSSOMTOwlApplication application, IMappingTransformer<org.semanticweb.owlapi.model.OWLAxiom> innerTransformer, Map<String,String> keyedArguments)
      Given an axiom generator, maybe wraps it into another generator that would produce the same axiom but annotated with metadata from the mapping from which the axiom is derived.
      Parameters:
      application - The SSSOM/T-OWL application.
      innerTransformer - The original axiom generator.
      keyedArguments - The named parameters given to a SSSOM/T-OWL function. This method will look for the annots and annots_uris keys to determine whether generated axioms should be annotated and how.
      Returns:
      The wrapped axiom generator, or the original generator if axiom annotations were not requested in the given parameters.

    • maybeCreateAnnotatedTransformer

      public static IMappingTransformer<org.semanticweb.owlapi.model.OWLAxiom> maybeCreateAnnotatedTransformer(SSSOMTOwlApplication application, IMappingTransformer<org.semanticweb.owlapi.model.OWLAxiom> innerTransformer, Map<String,String> keyedArguments, List<String> arguments, int nArgs)
      Given an axiom generator, maybe wraps it into another generator that would produce the same axiom but annotated with metadata from the mapping from which the axiom is derived.

      This method is similar to maybeCreateAnnotatedTransformer(SSSOMTOwlApplication, IMappingTransformer, Map), but if the parameters map does not contain a annots key, it will look for an optional position argument instead. This is for backwards compatibility only, new SSSOM/T-OWL function should not use this method.

      Parameters:
      application - The SSSOM/T-OWL application.
      innerTransformer - The original axiom generator.
      keyedArguments - The named parameters given to a SSSOM/T-OWL function.
      arguments - The positional arguments given to a SSSOM/T-OWL function.
      nArgs - The number of non-optional arguments expected by the function.
      Returns:
      The wrapped axiom generator, or the original generator if axiom annotations were not requested in the given parameters or positional arguments.