org.incenp.obofoundry.sssom.owl (SSSOM-Java 1.8.2 API)

package org.incenp.obofoundry.sssom.owl

Related Packages

Package

Description

org.incenp.obofoundry.sssom
Class

Description

AnnotatedAxiomGenerator

A class to generated annotated OWL axioms from a mapping.

AnnotationAxiomGenerator

A class to generate OWL annotation assertion axioms from mappings.

AnnotationVisitor<T>

A mapping slots visitor that converts mapping metadata to OWL annotations.

DirectAxiomGenerator

A class to generate OWL axioms “directly”, that is without any external input outside of the mappings themselves.

DirectMetadataTransformer<T>

A class to transform mapping metadata slots into their corresponding IRIs according to the SSSOM specification.

EditableEntityChecker

A helper class used by SSSOMTOwlApplication and some of its functions.

EquivalentAxiomGenerator

A class to generate OWL equivalence axioms from mappings.

OWLGenerator

Generates OWL axioms from mappings.

OWLHelper

A class of helper methods to work with OWL ontologies.

OWLHelper.UpdateMode

Modes of operation for the OWLHelper.updateMappingSet(MappingSet, OWLOntology, String, boolean, EnumSet) method.

SSSOMTAnnotateFunction

Represents the SSSOM/T-OWL generator function "annotate".

SSSOMTAnnotateObjectFunction

Deprecated.
Maintained for backwards compatibility only; use annotate(%{object_id},
SSSOMTAnnotateSubjectFunction Deprecated. Maintained for backwards compatibility only; use annotate(%{subject_id}, SSSOMTCheckObjectExistenceFunction Deprecated. Maintained for backwards compatibility only. SSSOMTCheckSubjectExistenceFunction Deprecated. Maintained for backwards compatibility only. SSSOMTCreateAxiomFunction Represents the SSSOM/T-OWL generator function "create_axiom". SSSOMTDeclareClassFunction Deprecated. Maintained for backwards compatibility only; use declare(CLASS[,...]) instead. SSSOMTDeclareFunction Represents the SSSOM/T-OWL "declare" function. SSSOMTDeclareObjectPropertyFunction Deprecated. Maintained for backwards compatibility only; use declare(PROPERY[,...], /type="object_property") instead. SSSOMTDirectFunction Represents the SSSOM/T-OWL generator function "direct". SSSOMTExistsFunction Represents the SSSOM/T-OWL filter function "exists". SSSOMTHelper A helper class intended to host some methods used throughout the SSSOM/T-OWL code. SSSOMTIsAFunction Represents the SSSOM/T-OWL filter function "is_a". SSSOMTOwlApplication A specialised application of the SSSOM/Transform language to read mapping processing rules that produce OWL axioms. SSSOMTOwlSetvarFunction Deprecated. Maintained for backwards compatibility only. StandardMapMetadataTransformer<T> A class to transform mapping metadata slots into into their mapped IRIs according to the SSSOM specification. XrefExtractor Extract mappings from cross-references (oboInOwl:hasDbXref annotations) in a ontology.

Package org.incenp.obofoundry.sssom.owl