Uses of Class
org.incenp.obofoundry.kgcl.model.Change

Packages that use Change

Package	Description
org.incenp.obofoundry.kgcl
org.incenp.obofoundry.kgcl.model
org.incenp.obofoundry.kgcl.owl
org.incenp.obofoundry.kgcl.parser

Uses of Change in org.incenp.obofoundry.kgcl

Methods in org.incenp.obofoundry.kgcl that return Change

Modifier and Type	Method	Description
Change	RejectedChange.getChange()	Gets the rejected change.

Methods in org.incenp.obofoundry.kgcl that return types with arguments of type Change

Modifier and Type	Method	Description
static List<Change>	KGCLHelper.extractPendingChanges(org.semanticweb.owlapi.model.OWLOntology ontology, ZonedDateTime before)	Gets the "pending" (provisional) changes that are stored as KGCL annotations in the ontology,
List<Change>	KGCLReader.getChangeSet()	Gets the KGCL changeset that has been parsed from the underlying source.
static List<Change>	KGCLHelper.parse(File kgcl, Map<String,String> prefixMap, List<KGCLSyntaxError> errors, ILabelResolver labelResolver)	Parses KGCL from a file and collects syntax errors.
static List<Change>	KGCLHelper.parse(File kgcl, org.semanticweb.owlapi.model.PrefixManager prefixManager)	Parses KGCL from a file.
static List<Change>	KGCLHelper.parse(File kgcl, org.semanticweb.owlapi.model.PrefixManager prefixManager, List<KGCLSyntaxError> errors)	Parses KGCL from a file and collects syntax errors.
static List<Change>	KGCLHelper.parse(File kgcl, org.semanticweb.owlapi.model.PrefixManager prefixManager, List<KGCLSyntaxError> errors, ILabelResolver labelResolver)	Parses KGCL from a file and collects syntax errors.
static List<Change>	KGCLHelper.parse(String kgcl, Map<String,String> prefixMap, List<KGCLSyntaxError> errors, ILabelResolver labelResolver)	Parses KGCL from a string and collects syntax errors.
static List<Change>	KGCLHelper.parse(String kgcl, org.semanticweb.owlapi.model.PrefixManager prefixManager)	Parses KGCL from a string.
static List<Change>	KGCLHelper.parse(String kgcl, org.semanticweb.owlapi.model.PrefixManager prefixManager, List<KGCLSyntaxError> errors)	Parses KGCL from a string and collects syntax errors.
static List<Change>	KGCLHelper.parse(String kgcl, org.semanticweb.owlapi.model.PrefixManager prefixManager, List<KGCLSyntaxError> errors, ILabelResolver labelResolver)	Parses KGCL from a string and collects syntax errors.

Methods in org.incenp.obofoundry.kgcl with parameters of type Change

Modifier and Type	Method	Description
boolean	IPatcher.apply(Change change)	Applies a single change to the knowledge graph.
protected Void	AutoIDAllocator.doDefault(Change change)
protected T	ChangeVisitorBase.doDefault(Change v)	Override this method in derived classes to change the value returned by unimplemented methods.
void	RejectedChangeListener.rejected(Change change, String reason)	This method is called when a change cannot be applied to an ontology.
T	ChangeVisitorBase.visit(Change v)
void	KGCLWriter.write(Change change)	Serialise and writes a single KGCL change to the underlying sink.

Method parameters in org.incenp.obofoundry.kgcl with type arguments of type Change

Modifier and Type	Method	Description
default boolean	IPatcher.apply(List<Change> changes)	Applies a changeset to the knowledge graph.
boolean	IPatcher.apply(List<Change> changes, boolean noPartialApply)	Applies a changeset to the knowledge graph.
static void	KGCLHelper.apply(List<Change> changeset, IPatcher patcher, boolean noPartialApply, List<RejectedChange> rejects)	Applies a KGCL changeset using the provided patcher object.
static void	KGCLHelper.apply(List<Change> changeset, org.semanticweb.owlapi.model.OWLOntology ontology, org.semanticweb.owlapi.reasoner.OWLReasoner reasoner, boolean noPartialApply)	Applies a KGCL changeset to an ontology.
static void	KGCLHelper.apply(List<Change> changeset, org.semanticweb.owlapi.model.OWLOntology ontology, org.semanticweb.owlapi.reasoner.OWLReasoner reasoner, boolean noPartialApply, List<RejectedChange> rejects)	Applies a KGCL changeset to an ontology.
static void	KGCLHelper.apply(List<Change> changeset, org.semanticweb.owlapi.model.OWLOntology ontology, org.semanticweb.owlapi.reasoner.OWLReasoner reasoner, boolean noPartialApply, List<RejectedChange> rejects, boolean provisional)	Applies a KGCL changeset to an ontology.
boolean	AutoIDAllocator.reallocate(List<Change> changes)	Assigns automatic IDs in the given list of change objects.
void	KGCLWriter.write(List<Change> changes)	Serialises and writes a KGCL changeset to the underlying sink.

Constructors in org.incenp.obofoundry.kgcl with parameters of type Change

Modifier	Constructor	Description
	RejectedChange(Change change, String reason)	Creates a new instance.

Uses of Change in org.incenp.obofoundry.kgcl.model

Subclasses of Change in org.incenp.obofoundry.kgcl.model

Modifier and Type	Class	Description
class	AddNodeToSubset	Places a node inside a subset, by annotating that node
class	ClassCreation	A node creation where the owl type is 'owl:Class'
class	ComplexChange	A change that is is a composition of other changes
class	EdgeChange	A change in which the element that is the focus of the change is an edge.
class	EdgeCreation	An edge change in which a de-novo edge is created.
class	EdgeDeletion	An edge change in which an edge is removed.
class	EdgeLogicalInterpretationChange	An edge change where the subject, object, and predicate are unchanged, but the logical interpretation changes
class	EdgeObsoletion	An edge change in which an edge is obsoleted.
class	EdgeRewiring	An edge change where one node is replaced with another, as in the case of obsoletion with replacement
class	LogicalAxiomChange	A simple change where a logical axiom is changed, where the logical axiom cannot be represented as an edge
class	MappingCreation	A specific kind of edge creation in which the created edge is a mapping.
class	MappingPredicateChange	A node mapping change where the predicate of a mapping is changed.
class	MappingReplacement	A node mapping change where the object of a mapping is changed
class	MetadataAssertionPredicateChange	A node metadata assertion change where the predicate of a metadata assertion is changed.
class	MetadataAssertionReplacement	A node metadata assertion change where the object of a metadata assertion is changed
class	MultiNodeObsoletion	A complex change consisting of multiple obsoletions.
class	NameBecomesSynonym	A node synonym where the name NAME of an node NODE moves to a synonym, and NODE receives a new name.
class	NewMapping	A node mapping change where a mapping is added to a node
class	NewMetadataAssertion	A node metadata assertion change where a metadata assertion is added to a node
class	NewSynonym	A node synonym change where a de-novo synonym is created
class	NewTextDefinition	A node change where a de-novo text definition is created
class	NodeAnnotationChange	A node change where the change alters node properties/annotations.
class	NodeAnnotationReplacement	A node annotation change where the change replaces a particular property value.
class	NodeChange	A simple change where the change is about a node
class	NodeCreation	a node change in which a new node is created
class	NodeDeepening	A node move in which a node where the destination is a proper descendant of the original location.
class	NodeDeletion	Deletion of a node from the graph.
class	NodeDirectMerge	An obsoletion change in which all metadata (including name/label) from the source node is deleted and added to the target node, and edges can automatically be rewired to point to the target node
class	NodeMappingChange	A node change where the mappings for that node are altered
class	NodeMetadataAssertionChange	A node change where the metadata assertion (OWL annotations) for that node are altered
class	NodeMove	A node move is a combination of deleting a parent edge and adding a parent edge, where the predicate is preserved and the object/parent node changes
class	NodeObsoletion	Obsoletion of a node deprecates usage of that node, but does not delete it.
class	NodeObsoletionWithDirectReplacement	An obsoletion change in which information from the obsoleted node is selectively copied to a single target, and edges can automatically be rewired to point to the target node
class	NodeObsoletionWithNoDirectReplacement	An obsoletion change in which there is no direct replacement
class	NodeRename	A node change where the name (aka rdfs:label) of the node changes
class	NodeShallowing	The opposite of node deepening
class	NodeSynonymChange	None
class	NodeTextDefinitionChange	A node change where the text definition is changed
class	NodeUnobsoletion	unobsoletion of a node deprecates usage of that node.
class	ObjectPropertyCreation	A node creation where the owl type is 'ObjectProperty'
class	PlaceUnder	An edge creation where the predicate is owl:subClassOf
class	PredicateChange	An edge change where the predicate (relationship type) is modified.
class	RemoveMapping	A node mapping change where a mapping is deleted
class	RemoveMetadataAssertion	A node metadata assertion change where a metadata assertion is deleted
class	RemoveNodeFromSubset	Removes a node from a subset, by removing an annotation
class	RemoveSynonym	A node synonym change where a synonym is deleted
class	RemoveTextDefinition	A node change where a text definition is deleted
class	RemoveUnder	An edge deletion where the predicate is owl:subClassOf
class	SetLanguageForName	A node change where the string value for the name is unchanged but the language tag is set
class	SimpleChange	A change that is about a single ontology element
class	SynonymPredicateChange	A node synonym change where the predicate of a synonym is changed.
class	SynonymReplacement	A node synonym change where the text of a synonym is changed
class	TextDefinitionReplacement	A node change where a text definition is modified
class	Transaction	A change that is a composition of a set of changes, where those changes are treated as a single unit.

Methods in org.incenp.obofoundry.kgcl.model that return Change

Modifier and Type	Method	Description
Change	Change.getHasUndo()

Methods in org.incenp.obofoundry.kgcl.model that return types with arguments of type Change

Modifier and Type	Method	Description
List<Change>	ComplexChange.getChangeSet()
List<Change>	Session.getChangeSet()
List<Change>	Transaction.getChangeSet()

Methods in org.incenp.obofoundry.kgcl.model with parameters of type Change

Modifier and Type	Method	Description
void	Change.setHasUndo(Change hasUndo)
T	IChangeVisitor.visit(Change v)

Method parameters in org.incenp.obofoundry.kgcl.model with type arguments of type Change

Modifier and Type	Method	Description
void	ComplexChange.setChangeSet(List<Change> changeSet)
void	Session.setChangeSet(List<Change> changeSet)
void	Transaction.setChangeSet(List<Change> changeSet)

Uses of Change in org.incenp.obofoundry.kgcl.owl

Methods in org.incenp.obofoundry.kgcl.owl that return types with arguments of type Change

Modifier and Type	Method	Description
List<Change>	ProvisionalOWLTranslator.extractProvisionalChanges(boolean remove, ZonedDateTime before)	Extracts the list of provisional changes stored as KGCL annotations within the ontology.

Methods in org.incenp.obofoundry.kgcl.owl with parameters of type Change

Modifier and Type	Method	Description
boolean	OntologyPatcher.apply(Change change)
protected List<org.semanticweb.owlapi.model.OWLOntologyChange>	OWLTranslator.doDefault(Change v)
protected void	OWLTranslator.onReject(Change change, String format, Object... args)	Called internally whenever a change is rejected.
void	OntologyPatcher.rejected(Change change, String reason)	This method is called whenever a change is rejected.

Method parameters in org.incenp.obofoundry.kgcl.owl with type arguments of type Change

Modifier and Type	Method	Description
boolean	OntologyPatcher.apply(List<Change> changes, boolean noPartialApply)

Uses of Change in org.incenp.obofoundry.kgcl.parser

Constructor parameters in org.incenp.obofoundry.kgcl.parser with type arguments of type Change

Modifier	Constructor	Description
	ParseTree2ChangeVisitor(org.semanticweb.owlapi.model.PrefixManager prefixManager, ILabelResolver labelResolver, List<Change> changes)	Creates a new visitor with the specified prefix manager and list to store the changes.